PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_423.7
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Nin-like
Protein Properties Length: 329aa    MW: 37460.4 Da    PI: 7.0643
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_423.7genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.32.3e-26154203352
                       RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                  k +s +++s+yF++pi++AAk+L+v+lT+LK++CR++GI+RWPhRk+ sl
  evm.model.supercontig_423.7 154 KMLSRKTISQYFYMPITQAAKQLNVGLTLLKKRCRELGIRRWPHRKLMSL 203
                                  78999******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.348134223IPR003035RWP-RK domain
PfamPF020421.1E-21156203IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MANRQSVRGL PKYEILAEEE VNQVNPFSST STFLHSFDVS NIACGYPWFD WQNEMPIVQD  60
NTCFDSLPLT GNLPTDSLHT ALDIEQNLFV PEGNFVYNGN GCGFWNEVEA EKQPLLICYN  120
GENDNKDDEL GKEKKVNVKR CNNATTSTCN STSKMLSRKT ISQYFYMPIT QAAKQLNVGL  180
TLLKKRCREL GIRRWPHRKL MSLQTLIKNV QELGKKGEEN EGKLREAIEI LERERKMMEE  240
VPDLQLEDKT KRLRQACFKV NYKKRKMMTM SDSSSSSYTN KKTSSHDHAA AMAASSATTS  300
NHYVQEEDDQ LINSLLSQYS FSSTNIML*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00234DAPTransfer from AT1G74480Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_423.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909675.10.0protein RKD1-like
TrEMBLA0A061FXS19e-89A0A061FXS1_THECC; RWP-RK domain-containing protein, putative
STRINGevm.model.supercontig_423.70.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Representative plantOGRP5671777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.12e-47RWP-RK domain-containing protein