PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_42.145
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 377aa    MW: 42396.7 Da    PI: 4.7288
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_42.145genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.26.8e-4961341129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk 79 
                                   l+pGfrFhPtd elv++yL++kv gkkl++ e+i+evdiyk+ PwdLp k  +++++ +wy+F++r+kky +g+r +rat+
  evm.model.supercontig_42.145   6 LAPGFRFHPTDVELVKYYLTRKVLGKKLRV-EAIAEVDIYKFAPWDLPdKsLLRTGDLKWYYFCPREKKYGSGNRLKRATE 85 
                                   579***************************.89**************96445666888*********************** PP

                           NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                    gyWk+tgkd++v+  +++l+g+ ktLvf++g+ap g++tdWvmheyrle
  evm.model.supercontig_42.145  86 FGYWKTTGKDRPVHY-EEKLTGMIKTLVFHQGKAPVGKRTDWVMHEYRLE 134
                                   ***************.999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-572156IPR003441NAC domain
PROSITE profilePS5100553.2656156IPR003441NAC domain
PfamPF023656.1E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGKMSLAPGF RFHPTDVELV KYYLTRKVLG KKLRVEAIAE VDIYKFAPWD LPDKSLLRTG  60
DLKWYYFCPR EKKYGSGNRL KRATEFGYWK TTGKDRPVHY EEKLTGMIKT LVFHQGKAPV  120
GKRTDWVMHE YRLEDEYLVE RNVAQDAYVL CVIFKKDGLG PRNGAQYGAP FREEDWSDEE  180
PTNDDQTAVT SALVSMKRNN HINSLATSSH VHENQFAVSQ PKSCVSNTPH FVLDVHPPIK  240
DTGNASMPME VPQVTSDCVL AMLDRFTDDE ILASSGTGQN EEPCSISNAN NVEKPLQLDG  300
NDIYDGLMDL GDVGIVNEVD YNLADSYTLN RMEGSDNMAF IELLDLDAPL NSPFQGTLLE  360
QTPMDDQLAE RTTSFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-47215611168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_42.145
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899904.10.0NAC domain-containing protein 82-like
SwissprotQ9FY821e-103NAC82_ARATH; NAC domain-containing protein 82
TrEMBLV4V1291e-127V4V129_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_42.1450.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-105NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]