PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_42.145 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NAC | ||||||||
Protein Properties | Length: 377aa MW: 42396.7 Da PI: 4.7288 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.2 | 6.8e-49 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk 79 l+pGfrFhPtd elv++yL++kv gkkl++ e+i+evdiyk+ PwdLp k +++++ +wy+F++r+kky +g+r +rat+ evm.model.supercontig_42.145 6 LAPGFRFHPTDVELVKYYLTRKVLGKKLRV-EAIAEVDIYKFAPWDLPdKsLLRTGDLKWYYFCPREKKYGSGNRLKRATE 85 579***************************.89**************96445666888*********************** PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 gyWk+tgkd++v+ +++l+g+ ktLvf++g+ap g++tdWvmheyrle evm.model.supercontig_42.145 86 FGYWKTTGKDRPVHY-EEKLTGMIKTLVFHQGKAPVGKRTDWVMHEYRLE 134 ***************.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-57 | 2 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.265 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-25 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGKMSLAPGF RFHPTDVELV KYYLTRKVLG KKLRVEAIAE VDIYKFAPWD LPDKSLLRTG 60 DLKWYYFCPR EKKYGSGNRL KRATEFGYWK TTGKDRPVHY EEKLTGMIKT LVFHQGKAPV 120 GKRTDWVMHE YRLEDEYLVE RNVAQDAYVL CVIFKKDGLG PRNGAQYGAP FREEDWSDEE 180 PTNDDQTAVT SALVSMKRNN HINSLATSSH VHENQFAVSQ PKSCVSNTPH FVLDVHPPIK 240 DTGNASMPME VPQVTSDCVL AMLDRFTDDE ILASSGTGQN EEPCSISNAN NVEKPLQLDG 300 NDIYDGLMDL GDVGIVNEVD YNLADSYTLN RMEGSDNMAF IELLDLDAPL NSPFQGTLLE 360 QTPMDDQLAE RTTSFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-47 | 2 | 156 | 11 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00583 | DAP | Transfer from AT5G64060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_42.145 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021899904.1 | 0.0 | NAC domain-containing protein 82-like | ||||
Swissprot | Q9FY82 | 1e-103 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | V4V129 | 1e-127 | V4V129_9ROSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_42.145 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3692 | 25 | 62 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 1e-105 | NAC domain containing protein 103 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_42.145 |
Publications ? help Back to Top | |||
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