PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_42.100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NAC | ||||||||
Protein Properties | Length: 86aa MW: 10030.6 Da PI: 10.3622 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 22.9 | 2.3e-07 | 3 | 55 | 76 | 128 |
NAM 76 ratksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 r + g W++ + ev++ ++++vg kk+L+f ++ ++++ e+++ +mhe+ l evm.model.supercontig_42.100 3 RRVGYGAWRTEQ-SVEVVDDHDNVVGHKKMLTFEEKkKKKNIENSRRIMHEFFL 55 5567899*9665.567777799************6537777889*******976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 10.63 | 1 | 75 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.15E-7 | 3 | 58 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MDRRVGYGAW RTEQSVEVVD DHDNVVGHKK MLTFEEKKKK KNIENSRRIM HEFFLRDASI 60 VLPSNAVIGH KLKHQSPYLT ERKII* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_42.100 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021894656.1 | 7e-17 | uncharacterized protein LOC110812238 | ||||
Refseq | XP_021894657.1 | 7e-17 | uncharacterized protein LOC110812239 | ||||
Refseq | XP_021894658.1 | 7e-17 | uncharacterized protein LOC110812240 | ||||
Refseq | XP_021910774.1 | 3e-17 | NAC domain-containing protein 19-like, partial | ||||
STRING | evm.model.supercontig_42.100 | 5e-57 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5881 | 2 | 18 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_42.100 |