PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_4056.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 154aa    MW: 17593.7 Da    PI: 4.6262
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_4056.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.77.9e-22191396128
                           NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWk 84 
                                   rFhP+d++l++++L +k+ g +l+  + i+++ i k+ +P++L  kv   ++ e yfF+++    a ++r   +  +gyWk
  evm.model.supercontig_4056.1  19 RFHPNDHQLISHFLSPKAMGLSLPY-NRIQTAAIDKWtNPEELADKVPLgRDLERYFFARTGILVADDHRDDAVGGRGYWK 98 
                                   9************************.7799999998669****965555155599************************** PP

                           NAM  85 atgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                      +  +e++  ++ ++g k+ L+++   a +g++t+Wvm eyr+
  evm.model.supercontig_4056.1  99 PPSEnAEEIVF-NDDKIGEKRELIYF---AADGSETQWVMYEYRA 139
                                   65551677777.8999**********...889999********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-2410144IPR003441NAC domain
PROSITE profilePS5100521.39714154IPR003441NAC domain
PfamPF023651.2E-1419138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDFRAAGMAN LMSLLSLRRF HPNDHQLISH FLSPKAMGLS LPYNRIQTAA IDKWTNPEEL  60
ADKVPLGRDL ERYFFARTGI LVADDHRDDA VGGRGYWKPP SENAEEIVFN DDKIGEKREL  120
IYFAADGSET QWVMYEYRAF LTDEPLSPSA EPDN
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_4056.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905628.11e-112NAC transcription factor 25-like
STRINGevm.model.supercontig_4056.11e-111(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-17NAC domain containing protein 25