PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_40.39 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 142aa MW: 15446.1 Da PI: 10.7116 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.5e-19 | 66 | 116 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g evm.model.supercontig_40.39 66 PVYRGVRMRS-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 116 68*****998.**********854...59**********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.8E-13 | 66 | 116 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-36 | 67 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 67 | 125 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 67 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.064 | 67 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 68 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.20E-31 | 68 | 126 | No hit | No description |
PRINTS | PR00367 | 1.6E-10 | 90 | 106 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MADSPNWETE STTNSSSSSP SSPSSTGSSS QPPPVNKQLD SLTSNQPQPD IKEVTKKRPR 60 DSSKHPVYRG VRMRSWGKWV SEIREPRKKN RIWLGTFSTP EMAARAHDVA ALSIKGNSAI 120 LNFPELAGSL PRPSSNSLET N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-21 | 62 | 124 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_40.39 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012076774.1 | 5e-59 | ethylene-responsive transcription factor TINY | ||||
Swissprot | Q9LYD3 | 2e-45 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A067KC06 | 1e-57 | A0A067KC06_JATCU; Uncharacterized protein | ||||
STRING | evm.model.supercontig_40.39 | 2e-96 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-47 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_40.39 |
Publications ? help Back to Top | |||
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