PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_4.50

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C3H

Protein Properties

Length: 449aa MW: 49524.4 Da PI: 4.9732

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_4.50	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.3	1.7e-10	153	178	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C++++rtG CkyG C+++H++ evm.model.supercontig_4.50 153 GQTECKYYLRTGGCKYGKACRYNHSK 178 6789********************95 PP
2	zf-CCCH	40.3	5.3e-13	199	223	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++CkF+H+ evm.model.supercontig_4.50 199 GEKECPYYMRNGSCKYGANCKFNHP 223 6789********************9 PP
3	zf-CCCH	26.9	8.3e-09	333	359	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++Ck++H++ evm.model.supercontig_4.50 333 PGQPECSYFLKTGDCKFKSNCKYHHPK 359 5789*********************96 PP
4	zf-CCCH	34.2	4.1e-11	381	404	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++r+G+Ck+G+ CkF H+ evm.model.supercontig_4.50 381 QNVCTHYSRYGICKFGPACKFDHP 404 568********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.633	151	179	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.1E-5	151	178	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-8	153	178	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-6	154	179	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.5E-5	157	178	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.91	197	225	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.3E-7	197	224	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-6	199	224	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-10	199	223	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-5	203	222	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.333	332	360	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.8E-4	332	359	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-6	334	359	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.88E-5	336	360	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-6	376	404	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.802	378	406	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-4	378	405	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-8	381	404	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.9E-4	383	403	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MTDQSDQPPV SDPYKRNQSS TSNSDLDPPP PDPHNAAEDE PTLQLVQQLQ DLDFKEPADE 60 QPDGRDSNDE EEEDSKSEES DKNDNGDEDE TAIAGEGGDV DKMNERRRYL YPLRPQAEDC 120 AFYMKTGKLQ IWSQLQVSKE KVKEGEEQAE KPGQTECKYY LRTGGCKYGK ACRYNHSKAK 180 TSVASVLELN FLGLPIRQGE KECPYYMRNG SCKYGANCKF NHPDPTAVGG GDPSGYNNGG 240 SVSSPAPSQV SIGSWSSPRP LNETGPFIPM IFSPTHAVPS QNPEWNGYQA PVYPPERSMH 300 PPTAYLMNNP TTEASVYTHH QPQKLVDEFP ERPGQPECSY FLKTGDCKFK SNCKYHHPKN 360 RTVKTPSCAL SDKGLPLRPD QNVCTHYSRY GICKFGPACK FDHPIQPPSS IVSAVDQAAQ 420 FSGSQTTAEE VKVTADGNGS DASIQQHV*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MTDQSDQPPV SDPYKRNQSS TSNSDLDPPP PDPHNAAEDE PTLQLVQQLQ DLDFKEPADE  60
QPDGRDSNDE EEEDSKSEES DKNDNGDEDE TAIAGEGGDV DKMNERRRYL YPLRPQAEDC  120
AFYMKTGKLQ IWSQLQVSKE KVKEGEEQAE KPGQTECKYY LRTGGCKYGK ACRYNHSKAK  180
TSVASVLELN FLGLPIRQGE KECPYYMRNG SCKYGANCKF NHPDPTAVGG GDPSGYNNGG  240
SVSSPAPSQV SIGSWSSPRP LNETGPFIPM IFSPTHAVPS QNPEWNGYQA PVYPPERSMH  300
PPTAYLMNNP TTEASVYTHH QPQKLVDEFP ERPGQPECSY FLKTGDCKFK SNCKYHHPKN  360
RTVKTPSCAL SDKGLPLRPD QNVCTHYSRY GICKFGPACK FDHPIQPPSS IVSAVDQAAQ  420
FSGSQTTAEE VKVTADGNGS DASIQQHV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_4.50

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021908990.1	0.0	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 67
Swissprot	Q9STM4	1e-138	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A061FXU4	0.0	A0A061FXU4_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative
STRING	evm.model.supercontig_4.50	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4176	27	58
Representative plant	OGRP9141	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-135	C3H family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_4.50

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]