PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_4.210
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 367aa    MW: 38327.8 Da    PI: 6.5161
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_4.210genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.61.6e-3676151276
                          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eae 76 
                                   g k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++++a ++  ++
  evm.model.supercontig_4.210  76 VGTKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIQATGTGTIPAIAVsVNG 151
                                  5789************************************************************999995542111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.77782136IPR017887Transcription factor TCP subgroup
PfamPF036341.0E-2982162IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEANQEGRAI QEIDENVIIR SHNNEEESNE LTGYQQEPGI AMKEEELSDS EHQELDDSSL  60
PAALVPVMSK SINRAVGTKR PSKDRHTKVE GRGRRIRMPA TCAARIFQLT RELGHKSDGE  120
TIRWLLEHAE PAIIQATGTG TIPAIAVSVN GTLKIPTTSP AKEQGGGEFA RKRRKRAANS  180
DFIDVNEHCA HPNSVSSGLA PINTPAMTCA GVNVNVSPQG LVPLWPMGTF LLPPQSGVGG  240
AAIAGSSQTQ LWAIPAAATP FFNVAARPIA NFVSAMQPGG AGVSLEAVHV GASSGAMGSS  300
LAASSSSGAT SNGSTTGGSS SSTSAAAANS TSTTQMLRDF SLEIYDKREL QFLGRPANQE  360
TSCSKP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_4.210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908901.10.0transcription factor TCP19
RefseqXP_021908902.10.0transcription factor TCP19
RefseqXP_021908903.10.0transcription factor TCP19
RefseqXP_021908904.10.0transcription factor TCP19
RefseqXP_021908905.10.0transcription factor TCP19
RefseqXP_021908906.10.0transcription factor TCP19
RefseqXP_021908907.10.0transcription factor TCP19
TrEMBLA0A061G0X01e-130A0A061G0X0_THECC; TCP family transcription factor, putative
STRINGevm.model.supercontig_4.2100.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-83TCP family protein