PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_4.183

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Trihelix

Protein Properties

Length: 1008aa MW: 112605 Da PI: 7.107

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_4.183	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.4	1e-09	230	291	15	76
trihelix 15 remeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 +em+ ++ rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++++ e+ evm.model.supercontig_4.183 230 SEMNVQSTRGKTRADKDREVAEFLNRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQI 291 689999999**********************************************9965544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.510.10	7.7E-6	841	953	No hit	No description
SuperFamily	SSF56112	1.48E-16	854	989	IPR011009	Protein kinase-like domain
CDD	cd00180	2.27E-15	860	989	No hit	No description
Gene3D	G3DSA:1.10.510.10	7.5E-4	960	996	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 1008 aa Download sequence Send to blast
MGENKGDTSK KLPQQAPPPQ PPAQQQTQQQ LSSSDPKDPL DESNLESSRH QHHQQSSAVA 60 VSGAPFISPS LYVQIGATSS PFEQQFEPVN PKRTRYSSGQ WKLLPSPSSQ QKQTQIAIQP 120 ILAAAESSPS PTTNPINSQA QVAQTTAASS SDTASSPSHS PIPSISAGSG QDTNKPEGEQ 180 VHHQYRKGKY VSPVWKPNEM LWLARAWRIQ YQTGSDGSRS DHTEGGQGGS EMNVQSTRGK 240 TRADKDREVA EFLNRHGVNR DAKTAGTKWD NMLGEFRKVY EWERGGEREQ IGKSYFRLSP 300 YERKLHRLPA SFDEEVFEEL SQFMGPRMRT LQSRAAISIM ASGDDSRATH SGNRSALPPP 360 PHFKEEDLSL SARAKQLGLT SGGDQAYMHG GRGSLLGFDP ALGNIVVAPS SGTCSKEMRR 420 IGKVRMTWEE SVSLWAEEGE HHRGRVKLPG SSFLNADELT FFDDAMIACT MEAFEDGPLK 480 GFSVDRFVSG QQVKVFGRRK SSSSSGFNER SVQLSLPEPS VTRPIMSPSW EFQDPSDYYV 540 GCLRTPPTAL PSLFELSWHL QEPPPEEFRF PLRKDVYKDL PQGKELFFTT SMEPLDCRAI 600 TYDILSPIIR TNPILSFATA TIRDSFIGLW DDCINRVVSK FCSVEMVIIR KPSSFSTEPM 660 QDQWPNVTGF VRNFCLWRGE EDDQLREGQV DPASSLVEKL FWSYMDLPYV LGYYAVGYTV 720 TFCALSRSSQ DRISRTDLYS LDLSSPSERL KALVPCYRIA GLLSLLADRV VNSSVSGNYK 780 QYPFSDFERI DLGYNGNAME RTPSTVTMLF SSKRKWAALK EIYDFLDHRI PHAEFLYGSS 840 EKDLALVFKP RGCKSKPTNF NQLVEALKYV TKALVALHDL SFMHRDLCWE KVVRRIDRDN 900 EWFICGFDDA IDAPQIYPHG VAALNEARGR QAPEMGRGLH GVKVDVWGVG QLMKTCGLPN 960 LPKMLRELQN RCLDQNPEQR PTAADCYHHL LQLQSSLSAS SGSSAAY*

Sequence ? help Back to Top

Protein Sequence Length: 1008 aa Download sequence Send to blast

MGENKGDTSK KLPQQAPPPQ PPAQQQTQQQ LSSSDPKDPL DESNLESSRH QHHQQSSAVA  60
VSGAPFISPS LYVQIGATSS PFEQQFEPVN PKRTRYSSGQ WKLLPSPSSQ QKQTQIAIQP  120
ILAAAESSPS PTTNPINSQA QVAQTTAASS SDTASSPSHS PIPSISAGSG QDTNKPEGEQ  180
VHHQYRKGKY VSPVWKPNEM LWLARAWRIQ YQTGSDGSRS DHTEGGQGGS EMNVQSTRGK  240
TRADKDREVA EFLNRHGVNR DAKTAGTKWD NMLGEFRKVY EWERGGEREQ IGKSYFRLSP  300
YERKLHRLPA SFDEEVFEEL SQFMGPRMRT LQSRAAISIM ASGDDSRATH SGNRSALPPP  360
PHFKEEDLSL SARAKQLGLT SGGDQAYMHG GRGSLLGFDP ALGNIVVAPS SGTCSKEMRR  420
IGKVRMTWEE SVSLWAEEGE HHRGRVKLPG SSFLNADELT FFDDAMIACT MEAFEDGPLK  480
GFSVDRFVSG QQVKVFGRRK SSSSSGFNER SVQLSLPEPS VTRPIMSPSW EFQDPSDYYV  540
GCLRTPPTAL PSLFELSWHL QEPPPEEFRF PLRKDVYKDL PQGKELFFTT SMEPLDCRAI  600
TYDILSPIIR TNPILSFATA TIRDSFIGLW DDCINRVVSK FCSVEMVIIR KPSSFSTEPM  660
QDQWPNVTGF VRNFCLWRGE EDDQLREGQV DPASSLVEKL FWSYMDLPYV LGYYAVGYTV  720
TFCALSRSSQ DRISRTDLYS LDLSSPSERL KALVPCYRIA GLLSLLADRV VNSSVSGNYK  780
QYPFSDFERI DLGYNGNAME RTPSTVTMLF SSKRKWAALK EIYDFLDHRI PHAEFLYGSS  840
EKDLALVFKP RGCKSKPTNF NQLVEALKYV TKALVALHDL SFMHRDLCWE KVVRRIDRDN  900
EWFICGFDDA IDAPQIYPHG VAALNEARGR QAPEMGRGLH GVKVDVWGVG QLMKTCGLPN  960
LPKMLRELQN RCLDQNPEQR PTAADCYHHL LQLQSSLSAS SGSSAAY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_4.183

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021908971.1	0.0	uncharacterized protein LOC110823015
TrEMBL	A0A061G7K8	0.0	A0A061G7K8_THECC; Kinase superfamily protein isoform 1
STRING	evm.model.supercontig_4.183	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24
Representative plant	OGRP9479	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_4.183