PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_38.43
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 369aa    MW: 42904.5 Da    PI: 9.2553
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_38.43genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.58.8e-5661331128
                          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratks 80 
                                  lppGfrFhPtdeelv +yL +k++g+k+el e+i+++d+yk+ePwdLp k  + +++ ewyf+s+rdkky++g+r+nrat++
  evm.model.supercontig_38.43   6 LPPGFRFHPTDEELVAYYLDRKISGRKIEL-EIIPKIDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDKKYPNGSRTNRATRA 86 
                                  79****************************.99**************96435566888************************ PP

                          NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  gyWkatgkd++v+s ++++vg+kktLv+y+grap+g +++Wvmheyrl
  evm.model.supercontig_38.43  87 GYWKATGKDRPVHS-QKRVVGMKKTLVYYRGRAPNGIRSNWVMHEYRL 133
                                  **************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-594143IPR003441NAC domain
PROSITE profilePS5100557.4246200IPR003441NAC domain
PfamPF023659.7E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAPMILPPGF RFHPTDEELV AYYLDRKISG RKIELEIIPK IDLYKCEPWD LPDKSFLPSK  60
DMEWYFYSPR DKKYPNGSRT NRATRAGYWK ATGKDRPVHS QKRVVGMKKT LVYYRGRAPN  120
GIRSNWVMHE YRLIHSPSRS EAFSNLKGCS IELGFQMKRE RNETCRRHVK LRNFQMKFVY  180
KSTRISTKTD SYALCRIFKK KKQNCKMRKE ENTEDWRWDE CHLAGDDNNK LPSDTSSSDV  240
TQGTPTNARD LHHTFASSEE ASSSAYVYSY RLDFSSNLTK EVQMGEYPGM DYPPLGIDDF  300
PQINIVDPTP TKPATTDLDN FMIDKYMNGT LDEIFSLSST DQLHMNSNSL HSTLSHHHHI  360
KYCNTQKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-53213311140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_38.43
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021900247.10.0NAC domain-containing protein 71-like
SwissprotQ9FFI52e-75NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A0M4G3Q61e-125A0A0M4G3Q6_MANES; NAC transcription factors 56
STRINGevm.model.supercontig_38.430.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81232640
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.13e-90NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]