PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_37.89
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 438aa    MW: 49466.9 Da    PI: 5.7112
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_37.89genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.61.5e-50151431128
                          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratk 79 
                                  +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi+evd++k+ePwd++   ++ +  +++wyfFs++dkky+tg+r+nrat 
  evm.model.supercontig_37.89  15 VPPGFRFHPTEEELLHYYLRKKVAYEKIDL-DVIREVDLNKLEPWDIQDkcRIGStPQNDWYFFSHKDKKYPTGTRTNRATM 95 
                                  69****************************.9***************952433332456*********************** PP

                          NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  +g+Wkatg+dk ++s + + +gl+ktLvfykgrap+g+k+dW+mheyrl
  evm.model.supercontig_37.89  96 AGFWKATGRDKIIYS-GFKRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 143
                                  ***************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5612174IPR003441NAC domain
PROSITE profilePS5100556.3815174IPR003441NAC domain
PfamPF023652.3E-2616143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MPEDVNLSVN GHSKVPPGFR FHPTEEELLH YYLRKKVAYE KIDLDVIREV DLNKLEPWDI  60
QDKCRIGSTP QNDWYFFSHK DKKYPTGTRT NRATMAGFWK ATGRDKIIYS GFKRIGLRKT  120
LVFYKGRAPH GQKSDWIMHE YRLDDNTNET NNGSASMGES MGEDGWVVCR VFRKKNYQKS  180
MESPKGSAIC TDSRTQMLCS DNDGVLDQIL LYMGRSNNSS TTCKTENNDV VPFSSNNSMR  240
SLLSAENLSS INGDGTVLQE RFMELPRLES PSSQNQLTSV LPMVNSSPNF DQEQQRVSFK  300
SCYDQSSMEE MLIAETDQSY KAAGLSDWVA FDRLVASQLN GLAKDDVVSC NVNKQLSSCF  360
GLDSNACYVV CGGNDEHDHD DDDDDTHLSH LYDHNLQRSN NHQVLAQVYS ENHHLWSFCT  420
KSSSPSSSSD PLCHLSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-491517617167NO APICAL MERISTEM PROTEIN
1ut4_B9e-491517617167NO APICAL MERISTEM PROTEIN
1ut7_A9e-491517617167NO APICAL MERISTEM PROTEIN
1ut7_B9e-491517617167NO APICAL MERISTEM PROTEIN
3swm_A1e-481517620170NAC domain-containing protein 19
3swm_B1e-481517620170NAC domain-containing protein 19
3swm_C1e-481517620170NAC domain-containing protein 19
3swm_D1e-481517620170NAC domain-containing protein 19
3swp_A1e-481517620170NAC domain-containing protein 19
3swp_B1e-481517620170NAC domain-containing protein 19
3swp_C1e-481517620170NAC domain-containing protein 19
3swp_D1e-481517620170NAC domain-containing protein 19
4dul_A9e-491517617167NAC domain-containing protein 19
4dul_B9e-491517617167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:17890373}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00016PBMTransfer from AT1G32770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_37.89
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021900478.10.0NAC domain-containing protein 43-like
SwissprotQ9LPI71e-110NAC12_ARATH; NAC domain-containing protein 12
TrEMBLA0A061G3T71e-172A0A061G3T7_THECC; NAC domain-containing protein, putative
STRINGevm.model.supercontig_37.890.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77828124
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32770.11e-113NAC domain containing protein 12
Publications ? help Back to Top
  1. Zhao Q, et al.
    Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis.
    Phytochemistry, 2015. 112: p. 170-8
    [PMID:25107662]
  2. Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
    Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
    J. Plant Physiol., 2015. 175: p. 86-94
    [PMID:25506770]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Huang J,Chen F,Wu S,Li J,Xu W
    Cotton GhMYB7 is predominantly expressed in developing fibers and regulates secondary cell wall biosynthesis in transgenic Arabidopsis.
    Sci China Life Sci, 2016. 59(2): p. 194-205
    [PMID:26803299]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]