PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_37.112
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 632aa    MW: 70113.4 Da    PI: 6.2929
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_37.112genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.95.5e-5591361128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratk 79 
                                   lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+evd++k+ePwdLp  + +k+e+ ew+fF++rd+ky++g+r+nrat+
  evm.model.supercontig_37.112   9 LPLGFRFRPTDEELINHYLRSKINGRDSEV-QVIPEVDVCKWEPWDLPglSVIKTEDPEWFFFCPRDRKYPNGHRSNRATD 88 
                                   699************************999.99***************6447888999*********************** PP

                           NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +gyWkatgkd++++s +++lvg+kktLvfy+grapkg++t+W+mheyr+
  evm.model.supercontig_37.112  89 AGYWKATGKDRTIKS-RKALVGMKKTLVFYRGRAPKGQRTNWIMHEYRA 136
                                   ***************.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-603142IPR003441NAC domain
PROSITE profilePS5100554.2559158IPR003441NAC domain
PfamPF023652.7E-2810135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MAVLSMESLP LGFRFRPTDE ELINHYLRSK INGRDSEVQV IPEVDVCKWE PWDLPGLSVI  60
KTEDPEWFFF CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRKALVGM KKTLVFYRGR  120
APKGQRTNWI MHEYRATDKD LDGSAPGQET ATSGMHIEKQ SEGIKSLLTD KCDNVTPNGF  180
VINESSGNSH TTSDAEEHIA EETTIEACPL PGGTSDVYNQ GDCKIFSPVQ PHIRTELPPY  240
MDALYASDFG SNSNGLLFQD GTGEQDLCLT ELLDEVFNNQ DECSGEESTS QKNLILQNEM  300
HLSGNTCPLQ TVPPENAAFK ENGTYGDGDP DIAPQLYGPL VGASMWFDEH NDRKEPLQIQ  360
TSFGSYHAQG SLYGGIVGHR DPSSDDSITN LTNPVNPPCD LISGTGVKIR SRQAQIRPNL  420
DNFINQGTAS RRLRLKVEPS PSSVAYDNKR DMNRREEEDE VQSYVSEVIE PAKLPCGSAR  480
RRIKMRIRVQ QPRHEPNSEN FVSQGNAPRR IRLQTKRFST FVQEGRSRYV DMATEEASER  540
SLTFYEPSTK SEPVNIDGKK EISHGYFGKH RLRPKLGGTG CSQTGAITSS QGQPKRPGSS  600
SLLGYIVMTG VAVMVVILLI GVSRCLVPAA A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-45413812144NO APICAL MERISTEM PROTEIN
1ut4_B6e-45413812144NO APICAL MERISTEM PROTEIN
1ut7_A6e-45413812144NO APICAL MERISTEM PROTEIN
1ut7_B6e-45413812144NO APICAL MERISTEM PROTEIN
3swm_A7e-45413815147NAC domain-containing protein 19
3swm_B7e-45413815147NAC domain-containing protein 19
3swm_C7e-45413815147NAC domain-containing protein 19
3swm_D7e-45413815147NAC domain-containing protein 19
3swp_A7e-45413815147NAC domain-containing protein 19
3swp_B7e-45413815147NAC domain-containing protein 19
3swp_C7e-45413815147NAC domain-containing protein 19
3swp_D7e-45413815147NAC domain-containing protein 19
4dul_A6e-45413812144NAC domain-containing protein 19
4dul_B6e-45413812144NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_37.112
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021900499.10.0NAC domain-containing protein 14
SwissprotB5X5701e-147NAC14_ARATH; NAC domain-containing protein 14
TrEMBLA0A1R3K6N41e-168A0A1R3K6N4_9ROSI; No apical meristem (NAM) protein
STRINGevm.model.supercontig_37.1120.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Representative plantOGRP1172646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-146NAC 014