PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_36.32
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 490aa    MW: 53638.4 Da    PI: 5.4191
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_36.32genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS339.75.1e-1041054841374
                         GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar..svselykalppsetseknssee 77 
                                  lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l +   ++ + k    s + ++n+ ++
  evm.model.supercontig_36.32 105 LVHLLIAAAEALTGVNKSreLARVILVRLKELVSPSDgTNMERLAAYFTEALQGLLDGaaASTATNKHHLISGNGPHNQMDV 186
                                  68***********85554449***********888766******************9942333444555667777788**** PP

                         GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg...s 154
                                  laa++l++++sP++kf+h+taNqaIleav +++r+Hi+D+di++G+QW++L+qaL sR+egpp  +lRiT++++  sg   s
  evm.model.supercontig_36.32 187 LAAFQLLQDMSPYVKFGHFTANQAILEAVTHDRRIHIVDYDIMEGIQWASLMQALVSRKEGPPapHLRITALSRGGSGsrrS 268
                                  ***********************************************************886656*********88878888 PP

                         GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
                                    +++etg+rL+ fA+++g pf+f++   ++ e++++++ ++ +gEal++n++l+l ++  +  ++     ++L+  ksl+P
  evm.model.supercontig_36.32 269 IGTVQETGRRLTAFAASIGQPFSFHLCRLDSDETFRPSAVKLVRGEALVINCMLHLPHFSYRASDS---VASFLSGAKSLNP 347
                                  899***********************9999****************************98554444...459********** PP

                         GRAS 237 kvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317
                                  +vv+++e+e+ + +++ F+ rf+++l++ysa++dslea++p + ++ + vEr++lg++i   ++   ++r e++    +W e
  evm.model.supercontig_36.32 348 RVVTLAEEEIGTtGEGGFVGRFMDSLHHYSAMYDSLEAGFPMQCRALSLVERVFLGPRIAGTLSRIYRSRGEENG--WSWGE 427
                                  *********9988999***************************************************99776555..9**** PP

                         GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                                  ++ ++GFkp  +s++++ qaklll  ++ dgyrvee  ++ lvlgWk+r+L+s+S W+
  evm.model.supercontig_36.32 428 WVAAVGFKPSCISYSNQVQAKLLLGLFN-DGYRVEEVnRNRLVLGWKSRRLLSASIWT 484
                                  ****************************.******76378899**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.95479464IPR005202Transcription factor GRAS
PfamPF035141.7E-101105484IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAMVIDDTHE LDFSAATTTT TTTTDDDLPC NWNDWSPVVD WDALSGGNDD FQDLIESLMD  60
DGALLNPSAR VSHPDQEPCH STSTPDAVMV DQDESKADDC KGLRLVHLLI AAAEALTGVN  120
KSRELARVIL VRLKELVSPS DGTNMERLAA YFTEALQGLL DGAAASTATN KHHLISGNGP  180
HNQMDVLAAF QLLQDMSPYV KFGHFTANQA ILEAVTHDRR IHIVDYDIME GIQWASLMQA  240
LVSRKEGPPA PHLRITALSR GGSGSRRSIG TVQETGRRLT AFAASIGQPF SFHLCRLDSD  300
ETFRPSAVKL VRGEALVINC MLHLPHFSYR ASDSVASFLS GAKSLNPRVV TLAEEEIGTT  360
GEGGFVGRFM DSLHHYSAMY DSLEAGFPMQ CRALSLVERV FLGPRIAGTL SRIYRSRGEE  420
NGWSWGEWVA AVGFKPSCIS YSNQVQAKLL LGLFNDGYRV EEVNRNRLVL GWKSRRLLSA  480
SIWTSPDSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-56914845379Protein SCARECROW
5b3h_A6e-56914844378Protein SCARECROW
5b3h_D6e-56914844378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_36.32
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021900812.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A061FHT30.0A0A061FHT3_THECC; GRAS family transcription factor
STRINGevm.model.supercontig_36.320.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Representative plantOGRP68391319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-164GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]