PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_36.180
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HD-ZIP
Protein Properties Length: 269aa    MW: 30760.1 Da    PI: 5.0328
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_36.180genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-1959112356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k++++t +q+++Le+ Fe+++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  evm.model.supercontig_36.180  59 KKRRLTLDQVKALEKNFEMENKLEPERKMKLAEELGLQPRQVAIWFQNRRARWK 112
                                   566899***********************************************9 PP
2HD-ZIP_I/II130.94.9e-4258150193
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrl+ +qvk+LE++Fe+e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlEkdy  Lk++ydalk++ ++Le
  evm.model.supercontig_36.180  58 EKKRRLTLDQVKALEKNFEMENKLEPERKMKLAEELGLQPRQVAIWFQNRRARWKTKQLEKDYGLLKANYDALKNDYSSLE 138
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelke 93 
                                   +e+e+L+++lke
  evm.model.supercontig_36.180 139 QEKEALTSKLKE 150
                                   *********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-2045116IPR009057Homeodomain-like
PROSITE profilePS5007117.76754114IPR001356Homeobox domain
SMARTSM003891.0E-1757118IPR001356Homeobox domain
PfamPF000462.1E-1659112IPR001356Homeobox domain
CDDcd000861.58E-1659115No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2061121IPR009057Homeodomain-like
PRINTSPR000317.2E-68594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000317.2E-694110IPR000047Helix-turn-helix motif
PfamPF021836.0E-15114155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MERLGSSDSL TALISIFPPK EEKSKQSKQG YSSEFQAMLD SFIEEDYLEE VSHGGSTEKK  60
RRLTLDQVKA LEKNFEMENK LEPERKMKLA EELGLQPRQV AIWFQNRRAR WKTKQLEKDY  120
GLLKANYDAL KNDYSSLEQE KEALTSKLKE LKAKLKEGQA ESSNSFRQDC QILSVQSQEG  180
SDLCSREIVK EETDNINGGS SSFHDFNCSS SSNQWSEQFH IQNSRMGFGH SSSQFVKIEE  240
QSLFPADESC NFFSVDQAPT LQWYFAGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_36.180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021900675.10.0homeobox-leucine zipper protein ATHB-6-like isoform X1
TrEMBLA0A1R3K2I61e-100A0A1R3K2I6_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_36.1800.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.16e-54homeobox protein 16