PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_348.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 364aa MW: 40208.4 Da PI: 4.6705 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.3 | 6.2e-16 | 20 | 64 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 + en+ qvtfsk r ++KKA+EL++LC +v +i+fs+ ++ evm.model.supercontig_348.6 20 KMENEASLQVTFSKHRSSLFKKASELCTLCRPDVGLIVFSPGNRA 64 6799999*********************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.507 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-20 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-21 | 13 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-15 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-18 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-15 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-15 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MADEGTSSKS KSRQKIESKK MENEASLQVT FSKHRSSLFK KASELCTLCR PDVGLIVFSP 60 GNRAFCYGNP NIDIVIDRFL SIDVRPARDP DNDNDTQQTI SRITEALDKE EAARKRGKEL 120 KQRRKGLMKE LWYTRSMDKF NLKELEVLDA GMKALWNDVA ELAKKLKKEQ GNSSSAEGSP 180 RDDGLFYSDP AMKGLTTLPM PSMPSNPTHE YAPSSTNSTP PLSSFCNLDS GNPNIMMMDN 240 LLNDSSMALD PVDDLKAMLR DLFNNLVMIE SDDPIATLNA RDNPDIMSDA LRNQIATMDI 300 NLSNDPNIGP NVFFNPSTMP HAPNDPISTT SDALNMIRIV PDDLNLDSVF DGFSRDVVCG 360 SIG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_348.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ410395 | 0.0 | KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911410.1 | 0.0 | agamous-like MADS-box protein AGL62 | ||||
STRING | evm.model.supercontig_348.6 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-33 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_348.6 |