PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_347.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 327aa MW: 35707 Da PI: 4.0432 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.9 | 3.1e-14 | 2 | 44 | 4 | 46 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 en+ qvtfsk r ++KK +EL++LC +v +i+fs+ ++ evm.model.supercontig_347.5 2 ENEASLQVTFSKHRSSLFKKTSELCTLCRPDVGLIVFSPGNRA 44 788899********************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.806 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-10 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-17 | 2 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.06E-16 | 2 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-5 | 13 | 28 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-5 | 28 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MENEASLQVT FSKHRSSLFK KTSELCTLCR PDVGLIVFSP GNRAFCYGNP NIDIVIDRFL 60 SIDVRPARDP DNENDTQQII SRITEVLKTR RRQQGSELKE LEVLDACMRA LWNDVAELAK 120 KLKKEQGNSS SAEGSPRDDG MFYSDPAMKA LTTLPMPSMP SNPTHEYAPS CTNSTPPLNS 180 FCNLDSGNPN IMMMDNPLND SSMALDPVDD LKAMPRDLFN NLVMIESDDP IASLNAGDNP 240 DIMSDAFGNQ IATMDINLSN DPISGLMNDS NLDSVFDGFT LEMLFADPLD DENFIVDNPN 300 EAANGDNPKT MPPPLAGNVL GSGQGF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_347.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ410395 | 0.0 | KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911410.1 | 0.0 | agamous-like MADS-box protein AGL62 | ||||
STRING | evm.model.supercontig_347.5 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-25 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_347.5 |