PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_347.13
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 274aa    MW: 30162.8 Da    PI: 6.7796
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_347.13genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.74.1e-201864349
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                  i+  +n qvtf+k r+gi+KKA+E+S+LC+ae+aviifs+  k++ +
  evm.model.supercontig_347.13 18 IKKATNLQVTFAKCRAGIFKKASEISTLCGAEIAVIIFSPAKKVFFF 64
                                  8999*************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.829868IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-22867IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-141030IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-231193IPR002100Transcription factor, MADS-box
PfamPF003199.0E-201763IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-143045IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-144566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEPPKKLKGP QMIEMVKIKK ATNLQVTFAK CRAGIFKKAS EISTLCGAEI AVIIFSPAKK  60
VFFFVSPSVE KLINRFSGPI EQHHSANRYD MNLSQLQQFQ AALEELYENV IKVAKENDAE  120
ENNINPNSDD QLFLGSFSNG TGLPFESIPL NAIGCPINMV NPNKNRVNSN KVNPNVISPS  180
MINPNMVNPA AYMKILRDML NNNNPNIPLS NSMIPNNPNM VSNVMPISSN PTNMMLPAAN  240
LMINNDQNLV PADHMMMNND QNMMVGASDA IND*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_347.13
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2386370.0AC238637.1 Carica papaya BAC clone 99B01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912041.10.0myocyte-specific enhancer factor 2A-like
TrEMBLA0A438JMZ72e-27A0A438JMZ7_VITVI; Agamous-like MADS-box protein AGL62
TrEMBLD7T3N53e-27D7T3N5_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_347.130.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-26AGAMOUS-like 62