PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_346.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 448aa    MW: 48551.2 Da    PI: 8.1585
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_346.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.4e-114873126
                                 --S---SGGGGTS--TTTTT-SS-SS CS
                      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                 ++++ C +++rtG C yG++C+F+H+
  evm.model.supercontig_346.1 48 PGEPDCLYYLRTGSCGYGSNCRFNHP 73
                                 5789*********************8 PP
2zf-CCCH36.21e-1193117327
                                  S---SGGGGTS--TTTTT-SS-SSS CS
                      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                  ++ C +f++tGtCkyG++Ck++H++
  evm.model.supercontig_346.1  93 QPDCGYFLKTGTCKYGPTCKYHHPK 117
                                  789********************96 PP
3zf-CCCH39.21.1e-12138162327
                                  S---SGGGGTS--TTTTT-SS-SSS CS
                      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                  ++ C++++rtG Ck+G  CkF+H++
  evm.model.supercontig_346.1 138 ERSCPYYMRTGSCKFGVACKFNHPQ 162
                                  678********************97 PP
4zf-CCCH41.71.9e-13286311227
                                  -S---SGGGGTS--TTTTT-SS-SSS CS
                      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                  ++++Cr+++ tGtCkyG+ CkF+H++
  evm.model.supercontig_346.1 286 DQPECRYYMNTGTCKYGSDCKFHHPK 311
                                  689*********************96 PP
5zf-CCCH28.62.5e-09332357227
                                  -S---SGGGGTS--TTTTT-SS-SSS CS
                      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                  +++ C ++  +G Ck+G++C+F H++
  evm.model.supercontig_346.1 332 GQAVCTNYIMYGLCKFGPTCRFDHPF 357
                                  7899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-54774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6014775IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-94973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-55274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-45372IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-690117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.72790118IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-993117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-694118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-496116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6134163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155135163IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4137162IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10137162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5141161IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6284311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.605284312IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10286311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-7287313IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-6290311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.413330358IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4330357IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5332357IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5333357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MPDNRQVQSN AVSNQSTDNI EEAFWRIKIH DNQEGGGGAH LGPYPDRPGE PDCLYYLRTG  60
SCGYGSNCRF NHPAYAAQGA QYYRDELPER VGQPDCGYFL KTGTCKYGPT CKYHHPKDRN  120
GAGPVSFNIL GLPMRQDERS CPYYMRTGSC KFGVACKFNH PQPASLGTGI PVTGPATYGS  180
VGPAILPSSG LPYVGGFPTW SLPRAPYITG PRLQGPPVYM PVVVSPSQGI LPTQGWNTYL  240
GNANPLSSTN IIGASLYNSK NQGDSSSSTQ MHMMPTFSPS FPERPDQPEC RYYMNTGTCK  300
YGSDCKFHHP KERIAQSAMS SIGPLGLPSR PGQAVCTNYI MYGLCKFGPT CRFDHPFVGY  360
SYNYGLSLHP PSVLDSSVLA YPRTPPTAHS SETSSMSSKV PDWTRSPDGS NKHQNSEAKK  420
SISPPERADS PPSSLQSSAE PSHEQSG*
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_346.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912042.10.0zinc finger CCCH domain-containing protein 3
SwissprotQ94AD91e-135C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLB9SSJ90.0B9SSJ9_RICCO; Zinc finger protein, putative
STRINGevm.model.supercontig_346.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-127C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]