PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_34.3
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 291aa    MW: 33182.5 Da    PI: 4.0717
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_34.3genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-075292348
                                -HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                                +W++Ia++++ gRt++++k+ w++yl
  evm.model.supercontig_34.3  5 RWSRIASCLP-GRTDNEIKNIWNTYL 29
                                4*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.875133IPR017930Myb domain
CDDcd001671.63E-5429No hitNo description
PfamPF002491.8E-5529IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-7536IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-11530IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MILIRWSRIA SCLPGRTDNE IKNIWNTYLK KRVFSESKHQ KKESTKFPST SSSSSSSSST  60
CTSSPNTMPS MEENSMVIKE VNEPVNSSLS SSNVANFGQD DVVLLPNPEE NNNNNAYDDG  120
DENQALISLM EFTETPIDEA ILEEVNKPEM IIPAGSGDQI DCSLLDIPFE VTHDDADDSF  180
WKILDEFGSF PPNPDPREPI IPEENREVEI FTGAEMEFAA DYHRRRHQAD HNRDWLQYLE  240
HELGLEGNMD NIFDNTGQEQ VMNINYFYHE MFKPTEDDFL MEVFHLPNNI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_34.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901093.11e-155LOW QUALITY PROTEIN: transcription factor MYB58-like
STRINGevm.model.supercontig_34.30.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.16e-11myb domain protein 58