PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_34.132
Common NameERF4
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 431aa    MW: 48433.7 Da    PI: 5.4578
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_34.132genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.3e-19213263256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  evm.model.supercontig_34.132 213 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 263
                                   59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.87E-33212271No hitNo description
PROSITE profilePS5103222.998213270IPR001471AP2/ERF domain
SMARTSM003804.0E-39213276IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-23213271IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-32213271IPR001471AP2/ERF domain
PfamPF008472.5E-12214263IPR001471AP2/ERF domain
PRINTSPR003677.4E-11214225IPR001471AP2/ERF domain
PRINTSPR003677.4E-11236252IPR001471AP2/ERF domain
SuperFamilySSF1014471.39E-5303313No hitNo description
SuperFamilySSF1014471.39E-5346386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEAGNKSGKS KKGVCVDEPE TMMGKEEDQV WEIDRKVEED LELSLERRQW KTVFDESSMS  60
DRPLKKIRSP DRHGGHDPSL TLCNSPPPPP PSGFPPMFPF AFDSSQRPFN LPQQFPTSSS  120
SQLPAFHSPF QPHQNQQHMI SFGPQHGNLG YPPFFTRESP MAGQHQQQQL LQYWSNALNP  180
SPRGRMMMMM NRFGQDNRPL FRPTLQPLNT TKLYRGVRQR HWGKWVAEIR LPRNRTRLWL  240
GTFDTAEDAA MAYDREAFKL RGENARLNFP ERFFNKEKSA STPSCSAASS FPTLQISTTE  300
TMPPPPPPPP PPPQEDNPDS DSGIGSSEAT ANDEVQGSGA GDNQELAWGA VAEAWFNSIP  360
AGWGPGSPVW DDLDTTSNLL FPSNLGFQEQ EFMSQHEQTH NYREQDNTGS ASSSSSSSCP  420
MRPFFWKDQD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20212272162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20212277470ATERF1
3gcc_A2e-20212277470ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_34.132
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5329910.0JX532991.1 Carica papaya ethylene-responsive transcription factor 4 (ERF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901137.10.0ethylene-responsive transcription factor ERF054-like
TrEMBLT1QCG20.0T1QCG2_CARPA; Ethylene-responsive transcription factor 4
STRINGevm.model.supercontig_34.1320.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-55ERF family protein
Publications ? help Back to Top
  1. Li X, et al.
    Isolation and characterization of ethylene response factor family genes during development, ethylene regulation and stress treatments in papaya fruit.
    Plant Physiol. Biochem., 2013. 70: p. 81-92
    [PMID:23770597]