PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_331.6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family LBD
Protein Properties Length: 59aa    MW: 6514.69 Da    PI: 10.3007
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_331.6genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26072.67.6e-231359147
                       DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47
                                 +CaaCk+lrr+Ca++Cv+apyfpa++p+kfa vhk+FGasnv k+l+
  evm.model.supercontig_331.6 13 PCAACKLLRRRCAQECVFAPYFPADEPQKFASVHKVFGASNVNKMLQ 59
                                 7********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.1451259IPR004883Lateral organ boundaries, LOB
PfamPF031955.8E-221359IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
MKVSGRKQGA LSPCAACKLL RRRCAQECVF APYFPADEPQ KFASVHKVFG ASNVNKMLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-22959757LOB family transfactor Ramosa2.1
5ly0_B5e-22959757LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_331.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513395.11e-35LOB domain-containing protein 4
RefseqXP_021644716.11e-35LOB domain-containing protein 4-like
SwissprotQ9SHE91e-32LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A2P5DV542e-34A0A2P5DV54_PARAD; Lateral organ boundaries domain containing protein
STRINGevm.model.supercontig_331.62e-36(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-35LOB domain-containing protein 4