PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_33.29 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 371aa MW: 40420.8 Da PI: 5.8325 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 62 | 111 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g evm.model.supercontig_33.29 62 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 111 59*******.**********93....35999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.0E-11 | 62 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-21 | 62 | 119 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.115 | 62 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-33 | 62 | 125 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-29 | 62 | 118 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.09E-30 | 62 | 118 | No hit | No description |
PRINTS | PR00367 | 2.0E-9 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MEEALRRLNG MNHVLESDPS DSLPDHQRKC TITAATATPA VNATASNKRS LKENGGNGGT 60 MRYRGVRRRP WGRYAAEIRD PQSKERRWLG TFDTAEEAAC AYDCAARAMR GLKARTNFVY 120 PTAPEPHPSA DHLLPASFNF SKQSQPSSRH FPPSSHWPSA ANYPLGDISC GSPSRRNPSL 180 NVLVLRDFLN SSSSSSSCSQ LSYDQFPCTL PLGFSANPFD SFTTSVPPAD DHCQGQNSGE 240 QVINGCTQAD GEINFLPQES PDSGLLQEII QGFFPKPLAK IHNDDCLKGS CYTQQHPVTE 300 IQEGMKSEIK TEPCDAYFRG GPQQLQSLNG LVGNGEEMAG SFQVGEVSIL DDIFQYPELL 360 SSIAARVQNT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-19 | 62 | 118 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_33.29 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021901319.1 | 0.0 | ethylene-responsive transcription factor ESR2-like | ||||
TrEMBL | A0A2C9USX4 | 5e-94 | A0A2C9USX4_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_33.29 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7355 | 25 | 41 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 3e-19 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_33.29 |