PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_33.207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 28307.4 Da PI: 4.1321 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.7 | 7.6e-22 | 19 | 139 | 6 | 128 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWk 84 rFhP+d++l+ ++L++k+ g +l+ +++ i+ +d ++P++L k+ e++e yfF+++ a ++r + +gyWk evm.model.supercontig_33.207 19 RFHPNDHQLILHFLTRKAMGLPLPQNRIyITAIDK-WTNPQELTDKIPLvEDSERYFFVRTGILVADDRRDDVVGGRGYWK 98 9*********************9997766777774.479****9544333788************99999999999***** PP NAM 85 atgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +e++ ++ ++g k+ L+++ + +g++t+Wvm+eyr+ evm.model.supercontig_33.207 99 PASEiAEEIVF-NDDKIGEKRELIYF---EADGSETQWVMDEYRM 139 66553788888.8999**********...677888********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.143 | 14 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-13 | 19 | 139 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-24 | 19 | 165 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDFDPADLAK AMSLLSLGRF HPNDHQLILH FLTRKAMGLP LPQNRIYITA IDKWTNPQEL 60 TDKIPLVEDS ERYFFVRTGI LVADDRRDDV VGGRGYWKPA SEIAEEIVFN DDKIGEKREL 120 IYFEADGSET QWVMDEYRMF LADEPPSSAK PDNVEEWLVY KLRNKKDVDV YDSTDLDESD 180 DVVSQIAREA AAAAALCILY ELLDNEEEDA PPASSTSTSE DLPDPKRRKG NTSGVIVADN 240 SDSDDDKKEN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-11 | 19 | 167 | 20 | 170 | Stress-induced transcription factor NAC1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_33.207 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021901179.1 | 0.0 | NAC domain-containing protein 68-like | ||||
STRING | evm.model.supercontig_33.207 | 0.0 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 2e-13 | NAC domain containing protein 32 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_33.207 |