PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_320.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 288aa    MW: 33301.1 Da    PI: 8.4362
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_320.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1501.2e-46111373128
                          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                  pGfrFhPt+eel+++yLk  + g++l++ ++i  ++iy+++PwdLp   k +e+ewyfF++rd+k+ +g r+nr+t++g+Wk
  evm.model.supercontig_320.2  11 PGFRFHPTEEELLDFYLKSMIYGSRLRF-DIIGFLNIYRHDPWDLPGLSKIGEREWYFFVPRDRKHGSGGRPNRTTETGFWK 91 
                                  9*************************99.99***************8778899***************************** PP

                          NAM  85 atgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  atg+d++++s    ++ +gl+ktLvfy+g+ap+g+ktdWvm+eyrl
  evm.model.supercontig_320.2  92 ATGSDRKIFSLsePKRIIGLRKTLVFYRGKAPRGSKTDWVMNEYRL 137
                                  ********997556677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100554.7419155IPR003441NAC domain
SuperFamilySSF1019413.27E-5610155IPR003441NAC domain
PfamPF023651.1E-2411137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSKMAIDFEL PGFRFHPTEE ELLDFYLKSM IYGSRLRFDI IGFLNIYRHD PWDLPGLSKI  60
GEREWYFFVP RDRKHGSGGR PNRTTETGFW KATGSDRKIF SLSEPKRIIG LRKTLVFYRG  120
KAPRGSKTDW VMNEYRLPDN CHQPKEIVLC KIYRKATPLK MLEERAAKEE ELRTTIQASS  180
PSPLSSLETI SFPSPNQEDL TLTHQMMFEK ESKETQMAAE VNYSNDQETE MRKGSLTSLQ  240
LPFGKDKLPD LQVPKMGMEW SFQDPFSNLS PWPLNLTPCT IGNILNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-451115517168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_320.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912173.10.0NAC domain-containing protein 35
SwissprotQ10S651e-92NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A0B2PNZ11e-125A0A0B2PNZ1_GLYSO; NAC domain-containing protein 22
STRINGevm.model.supercontig_320.20.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38992860
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-116NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]