PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_31.76 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 10322.7 Da PI: 6.8051 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.7 | 1.5e-09 | 6 | 50 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WTt d+l+ +a + + ++ +W+ ar +g g+t ++k ++ evm.model.supercontig_31.76 6 SWTTKQDKLFENALAIFDKDtpdRWHNLARAVG-GKTVDEVKKHYE 50 7********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.828 | 2 | 57 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-7 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.72E-13 | 5 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.56E-6 | 6 | 53 | No hit | No description |
Pfam | PF00249 | 2.8E-6 | 6 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-4 | 6 | 50 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MASGSSWTTK QDKLFENALA IFDKDTPDRW HNLARAVGGK TVDEVKKHYE LLVEDVKQIE 60 SGQVPLPNYK KMGYSYIDEE ERLRSLRLH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-35 | 2 | 89 | 6 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_31.76 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021901516.1 | 2e-61 | protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 6e-35 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A061FCL0 | 1e-47 | A0A061FCL0_THECC; DnaJ subfamily C member 2 | ||||
TrEMBL | A0A067KU42 | 2e-47 | A0A067KU42_JATCU; Uncharacterized protein | ||||
STRING | evm.model.supercontig_31.76 | 8e-61 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 2e-35 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_31.76 |
Publications ? help Back to Top | |||
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