PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_3097.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GRAS | ||||||||
Protein Properties | Length: 109aa MW: 12746.6 Da PI: 9.1227 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 127.6 | 1.4e-39 | 2 | 107 | 267 | 373 |
GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 lf+s++++++r+ +eri+vE+++l+r+ivn+vaceg+er+erhe ++kW++rl++aGF++++ls ++++ +++llr ++ + evm.model.supercontig_3097.1 2 LFESIDVTMGRDRKERINVEQHCLARDIVNIVACEGKERVERHELFGKWKSRLTMAGFRQYSLSPYVNSAIRSLLRYYS-E 81 8***************************************************************************999.6 PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaW 373 y++ee++g+++lgWkdr+L+s+SaW evm.model.supercontig_3097.1 82 HYKLEEKDGAMLLGWKDRNLISASAW 107 6************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 18.477 | 1 | 89 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.6E-37 | 2 | 107 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
QLFESIDVTM GRDRKERINV EQHCLARDIV NIVACEGKER VERHELFGKW KSRLTMAGFR 60 QYSLSPYVNS AIRSLLRYYS EHYKLEEKDG AMLLGWKDRN LISASAWH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-13 | 2 | 107 | 272 | 377 | Protein SCARECROW |
5b3h_D | 3e-13 | 2 | 107 | 272 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_3097.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028126203.1 | 1e-63 | scarecrow-like protein 21 | ||||
Refseq | XP_028126224.1 | 2e-64 | chitin-inducible gibberellin-responsive protein 1-like | ||||
Swissprot | Q69VG1 | 3e-54 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A061F6I6 | 5e-62 | A0A061F6I6_THECC; GRAS family transcription factor isoform 2 | ||||
TrEMBL | D4QD66 | 6e-62 | D4QD66_DIACA; GRAS family transcription factor | ||||
STRING | evm.model.supercontig_3097.1 | 1e-75 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM31727 | 2 | 2 | Representative plant | OGRP14896 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 2e-52 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_3097.1 |
Publications ? help Back to Top | |||
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