PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_30.87 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 30451.2 Da PI: 6.7282 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.8 | 1.4e-09 | 13 | 42 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rg W++eEde+l++ ++ +G g+W+++++ evm.model.supercontig_30.87 13 RGLWSPEEDEKLIKHITAHGHGSWSSVPKL 42 788************************986 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.8e-15 | 47 | 89 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++++eE+ +++++ + lG++ W+ Ia++++ gRt++++k++w+ evm.model.supercontig_30.87 47 RGSFSAEEERIIIEVQRILGNK-WAQIAKYLP-GRTDNEVKNFWN 89 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-13 | 4 | 42 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.09E-19 | 10 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 26 | 12 | 44 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-7 | 13 | 42 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.046 | 42 | 96 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 44 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-15 | 46 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-14 | 47 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.79E-11 | 49 | 89 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MGHQCCNKQK VKRGLWSPEE DEKLIKHITA HGHGSWSSVP KLADVKRGSF SAEEERIIIE 60 VQRILGNKWA QIAKYLPGRT DNEVKNFWNS SIKKKLIAQA FQSPTQNLLI TSPNRSHNTN 120 ICNNNNTHVN PQPRLMSFEY PSNNSPCCFS ILNQISTTPP LESHKNIVWS ATATTTESRD 180 QLASPSPWEY ITTHHDHLQP GIFTSSPLTQ SGFETAWISG GGFQPRDLHE EKMIKCQGLD 240 SEKADVCSSS MGAFPDESLE FDIDFVELLN C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-20 | 13 | 96 | 7 | 108 | B-MYB |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_30.87 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021901558.1 | 1e-169 | transcription factor MYB86-like | ||||
STRING | evm.model.supercontig_30.87 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 5e-45 | myb domain protein 67 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_30.87 |