PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_30.48

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

TCP

Protein Properties

Length: 510aa MW: 53470.2 Da PI: 6.9955

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_30.48	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.7	3.4e-41	136	242	4	116
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasn 84 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ evm.model.supercontig_30.48 136 VKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGST 217 589****************************************************************999888888888874 PP TCP 85 sssgkaaksaakskksqksaasalnlakesra 116 s++ +sk++++s + ++l+ ++ra evm.model.supercontig_30.48 218 LSAP-------PSKSAPHSFHGSSALQPHHRA 242 4444.......333333333333333334443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.0E-39	139	264	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.496	140	194	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MELTDLQTNN NQTNNSSPQP HQTHHSSSSS SSHLLLPFDG RSGPGPSFMG SISIRSQPLP 60 TPSSASASSS SSSSSSSSPS SLSSSSSSST SASISSITTT TTPHLVDASL AIATRSTSLI 120 DSTNNNQQQI AATNPVKRST KDRHTKVDGR GRRIRMPATC AARVFQLTRE LGHKSDGETI 180 EWLLQQAEPA IIAATGTGTI PANFSTLNVS LRSSGSTLSA PPSKSAPHSF HGSSALQPHH 240 RAHYDEGGFA HTVSLLGFHH HQQQQHHLLT ADQIGDALAT GGDGGREDDG GGDSSDNYMR 300 KRFREDLFKE DNQPHNESGS GDGDGGSPIK SFKSGLQLPK PHQQTTSSGL MRSSNLLPAT 360 AMWAVAPAPN SSTFWMLPVT GGGGSGCSSV GGGAGPSESQ MWPFASGNPM QAPLHFMPRF 420 NVSSNVEYQG GQTSALQLGS MLMQQQQPSQ HLGLGISDSN LGMLAALNAY SRGGLNINSD 480 QQNNPMGHRH QQHQPQATDS GDEDPNSSQ*

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MELTDLQTNN NQTNNSSPQP HQTHHSSSSS SSHLLLPFDG RSGPGPSFMG SISIRSQPLP  60
TPSSASASSS SSSSSSSSPS SLSSSSSSST SASISSITTT TTPHLVDASL AIATRSTSLI  120
DSTNNNQQQI AATNPVKRST KDRHTKVDGR GRRIRMPATC AARVFQLTRE LGHKSDGETI  180
EWLLQQAEPA IIAATGTGTI PANFSTLNVS LRSSGSTLSA PPSKSAPHSF HGSSALQPHH  240
RAHYDEGGFA HTVSLLGFHH HQQQQHHLLT ADQIGDALAT GGDGGREDDG GGDSSDNYMR  300
KRFREDLFKE DNQPHNESGS GDGDGGSPIK SFKSGLQLPK PHQQTTSSGL MRSSNLLPAT  360
AMWAVAPAPN SSTFWMLPVT GGGGSGCSSV GGGAGPSESQ MWPFASGNPM QAPLHFMPRF  420
NVSSNVEYQG GQTSALQLGS MLMQQQQPSQ HLGLGISDSN LGMLAALNAY SRGGLNINSD  480
QQNNPMGHRH QQHQPQATDS GDEDPNSSQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	291	GGREDDGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_30.48

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021901654.1	0.0	transcription factor TCP8-like
Swissprot	Q9C518	3e-85	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A061DWY9	0.0	A0A061DWY9_THECC; TCP family transcription factor
STRING	evm.model.supercontig_30.48	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33
Representative plant	OGRP4591	10	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-71	TCP family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_30.48

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]