PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_30.163 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 127aa MW: 14379.9 Da PI: 9.2328 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.5 | 2.2e-10 | 2 | 25 | 19 | 42 |
HHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 19 gilKKAeELSvLCdaevaviifss 42 g++KK + L++LCd++++vii+s+ evm.model.supercontig_30.163 2 GLMKKVSKLCTLCDVKACVIIYSP 25 9**********************8 PP | |||||||
2 | K-box | 15.1 | 9.7e-07 | 51 | 91 | 32 | 73 |
K-box 32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 + eq + +G++L++L+l +L+ L +e+ lk+i + K+e l evm.model.supercontig_30.163 51 EMEQSKKMGKSLHQLNLIDLNDLGWLIEQHLKEIQK-KMETL 91 468899****************************75.55554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00266 | 4.79E-18 | 2 | 58 | No hit | No description |
Pfam | PF00319 | 1.4E-8 | 2 | 26 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-11 | 2 | 57 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MGLMKKVSKL CTLCDVKACV IIYSPYDSQP DVWPSPLGAQ HVLADFKRMP EMEQSKKMGK 60 SLHQLNLIDL NDLGWLIEQH LKEIQKKMET LNKSPQPQEV RDGGVMKGPS ETFTQIKENS 120 RVKKLQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_30.163 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021910735.1 | 1e-83 | agamous-like MADS-box protein AGL80, partial | ||||
Swissprot | Q9FJK3 | 1e-23 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2H5NT82 | 5e-35 | A0A2H5NT82_CITUN; Uncharacterized protein | ||||
TrEMBL | V4S796 | 6e-35 | V4S796_9ROSI; Uncharacterized protein | ||||
TrEMBL | V4SWL0 | 5e-35 | V4SWL0_9ROSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_30.163 | 1e-88 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 5e-26 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_30.163 |
Publications ? help Back to Top | |||
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