PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_30.148
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MIKC_MADS
Protein Properties Length: 770aa    MW: 86233.7 Da    PI: 6.1567
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_30.148genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.52e-241059251
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  rien+s rqvtf+kRr g+lKK +ELSvLCdae+ ++ifss+gk++ y+s
  evm.model.supercontig_30.148 10 RIENTSTRQVTFAKRRVGLLKKTHELSVLCDAEIGLVIFSSSGKMFQYCS 59
                                  8***********************************************96 PP
2K-box65.51.9e-228817712100
                         K-box  12 akaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                                   ++ e++q e+++++ke++nLq ++ ++ G+ dL+   +++L +Le qLe+s++k+R++K +ll +q+++lq+ke++l+een
  evm.model.supercontig_30.148  88 SHCEQMQGEMRRMRKETHNLQLSLQRYTGDiDLTAVHYEDLVELEGQLENSVNKVRARKFQLLQQQLDNLQRKERMLEEEN 168
                                   67899************************989************************************************* PP

                         K-box  92 kaLrkklee 100
                                   +++ ++++e
  evm.model.supercontig_30.148 169 QQIYQMIKE 177
                                   ****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.226161IPR002100Transcription factor, MADS-box
CDDcd002657.35E-35272No hitNo description
SuperFamilySSF554556.67E-27282IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-25323IPR002100Transcription factor, MADS-box
PfamPF003195.3E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.35490181IPR002487Transcription factor, K-box
PfamPF014865.0E-2090175IPR002487Transcription factor, K-box
SuperFamilySSF643561.14E-26247381IPR011012Longin-like domain
Gene3DG3DSA:3.30.450.605.8E-18248380No hitNo description
PfamPF009282.3E-32523744IPR028565Mu homology domain
SuperFamilySSF494475.49E-28524745IPR028565Mu homology domain
PROSITE profilePS5107233.197524769IPR028565Mu homology domain
CDDcd092541.74E-112525766No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006810Biological Processtransport
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MGQGKIPIRR IENTSTRQVT FAKRRVGLLK KTHELSVLCD AEIGLVIFSS SGKMFQYCSQ  60
SSSMDQIINK YHLARGIHPE NTNDPVFSHC EQMQGEMRRM RKETHNLQLS LQRYTGDIDL  120
TAVHYEDLVE LEGQLENSVN KVRARKFQLL QQQLDNLQRK ERMLEEENQQ IYQMIKETQM  180
AWEQQQVAIA GHPKQEAEHR QLLDLFDPFS GEEQPSSFLQ LALLSPRFQP PYRLQPTHPN  240
YLQDFTLHDN ATYVLVSRQF VDMSRIRIEG LLAAFPKLVG TGKQHTYVET ENVRYVYQPI  300
EALYLLLVTN KQSNILEDLE TLRLLSKLVP EYSMSLDEEG ICKTAFELIF AFDEVISLGH  360
KENVTVSQVK QYCEMESHEE KLHKLVMQSK INETKDVMKR KASEIDKSKI EKNRSDKGGF  420
MSLQSMGSGR IESSFSDMSI SSGGGGFGSG SGIAISNEVD SFSAKSKGRP PSAATAPPKG  480
LGMKLGKSQR TNQFLESLKA EGEVIYEDVQ PKAGVSKSAA PPPTDPITLT VEEKLNVTLK  540
RDGGVSNFDV QGTLSLQILN QEDGFIQVQI ESGQNPGILF KTHPNVNKEL FANENILGLK  600
DPNRSFPTGQ SGDAAGVGLL KWRMQSVDES MVPLTINCWP SVSGNETYVS IEYEASSAFD  660
LRNVVISVPL PAVREAPNVR QIDGEWRYDS RNSILEWSVL LIDNSNRSGS MEFVVPPADS  720
SAFFPISVQF SATSTYSNLK VANIIPVRGG PPAKFSQRTQ LITENYQVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a1u_H1e-14525176912511COATOMER SUBUNIT DELTA
5a1v_H1e-14525176912511COATOMER SUBUNIT DELTA
5a1v_P1e-14525176912511COATOMER SUBUNIT DELTA
5a1v_Y1e-14525176912511COATOMER SUBUNIT DELTA
5a1w_H1e-14525176912511COATOMER SUBUNIT DELTA
5a1x_H1e-14525176912511COATOMER SUBUNIT DELTA
5a1x_P1e-14525176912511COATOMER SUBUNIT DELTA
5a1x_Q1e-14525176912511COATOMER SUBUNIT DELTA
5a1y_H1e-14525176912511COATOMER SUBUNIT DELTA
5a1y_P1e-14525176912511COATOMER SUBUNIT DELTA
5nzr_D1e-14525176912511Coatomer subunit delta
5nzs_D1e-14525176912511Coatomer subunit delta
5nzt_D1e-14525176912511Coatomer subunit delta
5nzt_I1e-14525176912511Coatomer subunit delta
5nzu_D1e-14525176912511Coatomer subunit delta
5nzv_D1e-14525176912511Coatomer subunit delta
5nzv_N1e-14525176912511Coatomer subunit delta
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtThe coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_30.148
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901588.10.0coatomer subunit delta-like isoform X2
SwissprotQ93Y220.0COPD_ARATH; Coatomer subunit delta
TrEMBLA0A251M1570.0A0A251M157_MANES; Coatomer subunit delta
STRINGevm.model.supercontig_30.1480.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.25e-51MIKC_MADS family protein
Publications ? help Back to Top
  1. Andersson MX,Sandelius AS
    A chloroplast-localized vesicular transport system: a bio-informatics approach.
    BMC Genomics, 2004. 5(1): p. 40
    [PMID:15236667]