PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3.516
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family CO-like
Protein Properties Length: 449aa    MW: 50678.2 Da    PI: 4.9732
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3.516genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.18.4e-091659340
                     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                                 +r C+ + +k++++fC  ++ +lC+ C  + H+       H++v
  evm.model.supercontig_3.516 16 ARACDGCLRKRARWFCAADDAFLCQACDASVHSAnqlasrHERV 59
                                 578*****************************667888888876 PP
2CCT68.32.1e-23394437144
                          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  evm.model.supercontig_3.516 394 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 437
                                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.8081461IPR000315B-box-type zinc finger
SMARTSM003366.1E-111461IPR000315B-box-type zinc finger
PfamPF006434.3E-71659IPR000315B-box-type zinc finger
CDDcd000215.61E-101761No hitNo description
PfamPF062036.0E-18394436IPR010402CCT domain
PROSITE profilePS5101716.083394436IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MMDDKKAANA MGGKTARACD GCLRKRARWF CAADDAFLCQ ACDASVHSAN QLASRHERVR  60
LQTASSNGTV VLNSRHENLA SSSPAWHQGF TRKARTPRQH HNHKHLLAQK VKDDEKTMNS  120
STDPVVPEIG SEEGSMEYEN EEQMLYRVPV FNPFAEDLCN IMTSEGFLEE APIGNHHHEE  180
DGNIGIDDYG HEDQTCELEN LHGFLPSDMD LAEFAADVES LLGVGLLDHD SCVDVKDLGL  240
VDHKVENDAC FGEKMGFVKV KEEELEGVMR GDCDLNPGFE QTLEWNFDCD SPVIGEEEEG  300
DEGEEEKKKI KRLSATVNGD VSRGEEKRNN IFLRLNYEEV ITAWASQGSP WTTGSRPELN  360
PDDGWPQYEG VCSENMRFLY GDVGGFGRGN NEEREARVSR YREKRRTRLF SKKIRYEVRK  420
LNAEKRPRMK GRFVKRSSLG NPYSYLNN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305312EKKKIKRL
2404420RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_3.516
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909078.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A061FU461e-162A0A061FU46_THECC; Transcription factor, putative
STRINGevm.model.supercontig_3.5160.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16600813
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-85B-box type zinc finger protein with CCT domain