PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_3.514 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | LBD | ||||||||
Protein Properties | Length: 235aa MW: 25235.5 Da PI: 6.045 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.3 | 1.4e-29 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77 +C++C+ lr++C++dC++ p++ p++q++++ +++k++G++ +l+l++a ++ r+ +++sl+yeA+ r+ +P+yG++ evm.model.supercontig_3.514 4 SCNGCRALRKGCSDDCIIKPCLqwiqtPESQANATLFLAKFYGRAGLLNLINAGADDLRPSIFRSLLYEACGRIVNPIYGSA 85 6********************************************************************************* PP DUF260 78 gvilklqqqleqlkaelallkee 100 g+++++++ql+++++e++l +ee evm.model.supercontig_3.514 86 GLLWSGSWQLCEAAVEAVLKGEE 108 ****************9998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.955 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-23 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MRISCNGCRA LRKGCSDDCI IKPCLQWIQT PESQANATLF LAKFYGRAGL LNLINAGADD 60 LRPSIFRSLL YEACGRIVNP IYGSAGLLWS GSWQLCEAAV EAVLKGEEIV QVSSDVALSS 120 STPPLKAGDI RHVSKQESSD VSNQLCKVKT RSRFKRPANK SKINSERADE SREDEGLKRR 180 RNEKSDGSVM GPSCGGDSGA EGDSVSVETV EPCLAKLEEP ADGSQLNLEL TLGI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_3.514 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021909352.1 | 1e-170 | LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 2e-74 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A438JZ91 | 1e-94 | A0A438JZ91_VITVI; LOB domain-containing protein 41 | ||||
TrEMBL | F6GTL0 | 1e-94 | F6GTL0_VITVI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_3.514 | 1e-169 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18027 | 8 | 9 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 9e-77 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_3.514 |