PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3.509
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 338aa    MW: 37987.4 Da    PI: 8.1081
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3.509genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.76.6e-5551321128
                          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                  lppGfrFhPtdeel+++yL+ kv++++++  ++i ++d++k+ePwdLp k++ +ekewyfF  rd+ky+tg r+nrat++gy
  evm.model.supercontig_3.509   5 LPPGFRFHPTDEELITYYLTTKVSDNTFTS-KAIVDADLNKCEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGY 85 
                                  79*************************999.88***************988999**************************** PP

                          NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  Wk+tgkdke++++ +g lvg+kktLvfykgrapkg+k++Wvmheyrl
  evm.model.supercontig_3.509  86 WKTTGKDKEIFRAgSGVLVGMKKTLVFYKGRAPKGVKSNWVMHEYRL 132
                                  ************967788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-633153IPR003441NAC domain
PROSITE profilePS5100560.6475153IPR003441NAC domain
PfamPF023653.3E-286132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT YYLTTKVSDN TFTSKAIVDA DLNKCEPWDL PGKASMGEKE  60
WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRAGS GVLVGMKKTL VFYKGRAPKG  120
VKSNWVMHEY RLDHKHSFRS TKEEWVVCRV FQKSSVKKPQ QPTFSSQAPS LESPCDTNSI  180
VNEFGDIELP NLNTINAANS SSTTTFSNIS TQSYHNGGPN HHINDLNMNM NLNMAIAAAT  240
ANLSSPLSWT SSLLGSNLSV NSLILRALQQ RNMARDQATS VDHQHHYSIM QQAGIGNLEN  300
NKNDLSTSSF QTSFSKVLDP AQTQPQQEQQ FNLDTMW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-54415519170NAC domain-containing protein 19
3swm_B6e-54415519170NAC domain-containing protein 19
3swm_C6e-54415519170NAC domain-containing protein 19
3swm_D6e-54415519170NAC domain-containing protein 19
3swp_A6e-54415519170NAC domain-containing protein 19
3swp_B6e-54415519170NAC domain-containing protein 19
3swp_C6e-54415519170NAC domain-containing protein 19
3swp_D6e-54415519170NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_3.509
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909618.10.0protein CUP-SHAPED COTYLEDON 1
TrEMBLA0A061FUV11e-146A0A061FUV1_THECC; NAC domain protein, IPR003441
STRINGevm.model.supercontig_3.5090.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-100NAC domain containing protein 58