PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3.502
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 302aa    MW: 34500.2 Da    PI: 6.7338
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3.502genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-172370148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 rg+WT eEd llv+++  +G g+W++ a++ g++Rt+k+c++rw++yl
  evm.model.supercontig_3.502 23 RGPWTLEEDTLLVHYISCHGEGRWNLLAKRAGLRRTGKSCRLRWLNYL 70
                                 89********************************************97 PP
2Myb_DNA-binding491.4e-1576119146
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                  rg+ ++ E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  evm.model.supercontig_3.502  76 RGNLSPREQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119
                                  78899*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5351870IPR017930Myb domain
SuperFamilySSF466893.0E-3021117IPR009057Homeodomain-like
SMARTSM007175.2E-142272IPR001005SANT/Myb domain
PfamPF002494.3E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-222477IPR009057Homeodomain-like
CDDcd001671.61E-102570No hitNo description
PROSITE profilePS5129424.1171125IPR017930Myb domain
SMARTSM007171.6E-1475123IPR001005SANT/Myb domain
PfamPF002491.2E-1476119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-2378124IPR009057Homeodomain-like
CDDcd001676.54E-1180119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSSISKSVSG SSSEDDVVAE LRRGPWTLEE DTLLVHYISC HGEGRWNLLA KRAGLRRTGK  60
SCRLRWLNYL KPDVKRGNLS PREQLLILEL HSKWGNRWSK IAQHLPGRTD NEIKNYWRTR  120
VQKQARNLNM EANSQAFQDM IRCFWMPRLL QKIEGSANSY PTQFQNPESN PLPARIVNPD  180
PVNYQLGQNH HEQSSDSEHG TSSCISSSES INISHFSEYP TSPFQASDSH GWNNCYHDVM  240
ESMNMAYANP VIGDLGNYYD YPGAASGCQM DHGNWVDDGL VVDQSLWNSD DQLWRNLQER  300
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24181252108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_3.502
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909629.10.0transcription factor MYB62-like
RefseqXP_021909631.10.0transcription factor MYB62-like
SwissprotQ9C9G71e-76MYB62_ARATH; Transcription factor MYB62
TrEMBLB9I2L11e-107B9I2L1_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_3.5010.0(Carica papaya)
STRINGevm.model.supercontig_3.5020.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-78myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]