PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_3.43 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 353aa MW: 39259.4 Da PI: 4.4744 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 122 | 171 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ kl+g evm.model.supercontig_3.43 122 KFRGVRQRP-WGKWAAEIRDPA----RgVRLWLGTYDTAEEAAMVYDNAAIKLRG 171 89*******.**********82....36*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.8E-30 | 121 | 179 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.21E-33 | 122 | 178 | No hit | No description |
Pfam | PF00847 | 8.2E-13 | 122 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 122 | 179 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-38 | 122 | 185 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.591 | 122 | 179 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 123 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MMMMDQSILC PVKYTEHKNI TKKFAKPSSF NHKEVTNQHT EVVHRVVRIS MTDHDATDSS 60 SDDEEDPFFS RQRVKKFVNE INIEPKNDVV IASSKKRPAA GPPSRRRPLK LPSCSKGENG 120 RKFRGVRQRP WGKWAAEIRD PARGVRLWLG TYDTAEEAAM VYDNAAIKLR GPDALTNFVT 180 PPAKESEKPE VNTSGSGYES GDESHNLSSP TSVLNFRTHS TDEAEPQKSA EPVNEPEEQE 240 SKSNPEPVQN SSQLMDESGD SMPMDFPFLD DFFNDSIPPM PLFDEPCSSS VFSDVVSDEP 300 SDSVFLDATF HDVGFVSTSF GDFGTSPAMF GQVDDYFQDI DDLFLSDPLV AL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 120 | 178 | 3 | 62 | ATERF1 |
3gcc_A | 1e-22 | 120 | 178 | 3 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_3.43 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021909040.1 | 0.0 | ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A061G219 | 1e-122 | A0A061G219_THECC; Ethylene-responsive transcription factor, putative | ||||
STRING | evm.model.supercontig_3.43 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2229 | 25 | 76 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-58 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_3.43 |