PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3.311
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 347aa    MW: 40095.8 Da    PI: 6.1888
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3.311genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.91.4e-5591381129
                          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratk 79 
                                  +ppGfrFhPt+eelv++yL++kv+++++++ +vik+vd+yk+ePwdL++  ++ + e++ewyfFs++dkky+tg+r+nrat+
  evm.model.supercontig_3.311   9 VPPGFRFHPTEEELVDYYLRRKVNSRRIDI-DVIKDVDLYKIEPWDLQElcRIGTeEQNEWYFFSHKDKKYPTGTRTNRATA 89 
                                  69****************************.99**************954555442556*********************** PP

                          NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                  +g+Wkatg+dk+++s k+ l+g++ktLvfy+grap+g+k+dW+mheyrle
  evm.model.supercontig_3.311  90 AGFWKATGRDKAIYS-KHDLIGMRKTLVFYQGRAPNGQKSDWIMHEYRLE 138
                                  ***************.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-616162IPR003441NAC domain
PROSITE profilePS5100559.0279162IPR003441NAC domain
PfamPF023651.8E-2810137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNMNTLVDVP PGFRFHPTEE ELVDYYLRRK VNSRRIDIDV IKDVDLYKIE PWDLQELCRI  60
GTEEQNEWYF FSHKDKKYPT GTRTNRATAA GFWKATGRDK AIYSKHDLIG MRKTLVFYQG  120
RAPNGQKSDW IMHEYRLETD EINGTPQFKQ EEGWVVCRVF KKRITTMRRV MSEHESASWY  180
DDQVSIMPDI DSPNQSNSQS NILYHIPHIP CKKELDNLPY QLPQDHQYYL SHLPHLESPK  240
LLQSSLTCNS LSPYPDINNS STLMPSSSLA QDQEHFQVQI HGQNLNNTTA ILYGNASEQA  300
LDQVMDWRVF DKFVASQLSQ EDVSKGNDNN FSSNASSNVL HSPANI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-50716313169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_3.311
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909472.10.0NAC domain-containing protein 7-like
SwissprotQ9FWX21e-128NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A061G7811e-168A0A061G781_THECC; NAC domain protein, IPR003441
STRINGevm.model.supercontig_3.3110.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21112678
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-108NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]