PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3.225
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 563aa    MW: 61577.6 Da    PI: 8.9307
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3.225genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.88.2e-18261310255
                                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  evm.model.supercontig_3.225 261 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 310
                                  889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.0E-25256330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-19257330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939259309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-15261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.12E-16261314No hitNo description
SMARTSM003536.8E-14265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MELPQSRPFE VEGRKPTHDF LSLYSHSTVQ QDPRPPSQGA NYLKTHDFLQ PLEQVGNTNT  60
KEETGSEIST SEKPPPPAPP PPMEHILPGG IGTYSISHIS YFNQRVPKPE GTAFPAAQAS  120
SNERNDENSN CSSYTGSGFT LWEESTLKKG KTGKENAGER PILREAAGKV AQWTTSERPS  180
QSSSNNHRNS FSSLSSSRSS AQKSQSFMEM IKSAKGSTQE EDLDDDEEFV LKKEISTTQK  240
GELRVKVDGK NTGDQKPNTP RSKHSATEQR RRSKINDRFQ MLRELIPHSD QKRDKASFLL  300
EVIEYIQFLQ EKVQKYEGSY QGWNHEPAKL IPWKNNQRAA EGYVDQSRGI KSGSAPAVVF  360
ASKFDEKNVV VSPTVPLSMQ NPIETDISTA TTLKAMDHHP VMINKPVPSP MFLQPCFSPV  420
QGGVSVALPS RMASDAENTA SQSQTFSSHS RSCNNGVAVA SDKLKEQGLT IEGGTISIST  480
IYSRGLLNTL TQALQGSGVD LSQASISVQI ELGKRARIQT TPLMSMSKDN EITPGNQGTI  540
RPRVAGGEGS DQPLKKAKTS KS*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_3.225
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909245.10.0transcription factor BIM1
SwissprotQ9LEZ31e-135BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A067KHS20.0A0A067KHS2_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_3.2250.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-120bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]