PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3.170
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 609aa    MW: 68567.4 Da    PI: 4.8095
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3.170genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.81.5e-5191361128
                          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratks 80 
                                  lp GfrF+Ptd elv++yL+ k++g++ ++  vi+e+d++k+ePwdLp  + +k+++ ew+fF++ d+ky++g+r nrat++
  evm.model.supercontig_3.170   9 LPLGFRFRPTDVELVHYYLRLKINGNNDDV-CVIREIDVCKWEPWDLPdlSVIKTRDLEWFFFCPLDRKYPNGSRLNRATEA 89 
                                  699************************999.78**************96447788888************************ PP

                          NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  gyWkatgkd++++s + +l+g+kktLvfy+grapkg++t+Wvmheyr+
  evm.model.supercontig_3.170  90 GYWKATGKDRKIKS-GANLIGMKKTLVFYTGRAPKGKRTNWVMHEYRA 136
                                  **************.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-583159IPR003441NAC domain
PROSITE profilePS5100553.6439159IPR003441NAC domain
PfamPF023651.6E-2610135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MASLSLNSLP LGFRFRPTDV ELVHYYLRLK INGNNDDVCV IREIDVCKWE PWDLPDLSVI  60
KTRDLEWFFF CPLDRKYPNG SRLNRATEAG YWKATGKDRK IKSGANLIGM KKTLVFYTGR  120
APKGKRTNWV MHEYRATEDD LDGSRPGQTA FVLLKLFKKQ DENLEGSNCD ETEPSNLSPT  180
VVKPSLEDLQ SELELPQVSP SLERQEEKPS RNAESCFADF SDGTTSCTQV LAECHSTNSN  240
VCNVEDQAAE VTGSDVDAQL EANLNLFYDP LLEPLDYNLF SPLHSQMQSE LGSSCMLYPN  300
DTAVSDSKGM EFQYGSNESD AYISEFLDSV IKDSEEYSYN LSAGPMNSTI ESETTNNMGS  360
VKDSGSCSES DAEVAQEQVL SVHELESEYP NTWEYAAMTS SNFLMETTHK EQTNPSILQN  420
EYAKHYYPLS GFAPVQSSNS FSTYQELGNP KNANGYSDIS GTGIRIRSRQ IQSQPYTENP  480
VIQGSAPRRL RLQTSVRGQI TKTGHNHGRK PIDKEEKTVP EEQNASIQED SWENIERHQE  540
LHAGMSQKTI PKSRELVFAY KQVRSIVSKA PLSSRTKIWC YTTMLRVAVV AVVFLMSVFT  600
WRFLKVES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-43813514139Stress-induced transcription factor NAC1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_3.170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2386074e-99AC238607.1 Carica papaya BAC clone 53G04, complete sequence.
GenBankCP0109884e-99CP010988.1 Carica papaya chromosome Y sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909576.10.0NAC domain-containing protein 62-like
TrEMBLA0A1Q3BZE61e-173A0A1Q3BZE6_CEPFO; NAM domain-containing protein
STRINGevm.model.supercontig_3.1700.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Representative plantOGRP9409612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.11e-109NAC domain containing protein 62