PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3.145
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRF
Protein Properties Length: 592aa    MW: 63546.3 Da    PI: 8.422
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3.145genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.66.1e-25222265144
                          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                  d+epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e
  evm.model.supercontig_3.145 222 DPEPGRCRRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKPVE 265
                                  79***************************************986 PP
2QLQ60.44.9e-21163197236
                          QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                                  +FT+aQ+++L++Q+++yKy++a++PvPp+Ll+ i+
  evm.model.supercontig_3.145 163 PFTNAQWNELERQAMIYKYMMASVPVPPDLLFSIT 197
                                  8*******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-13162198IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.5E-14163196IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.706163198IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.609222266IPR014977WRC domain
PfamPF088794.3E-21223265IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MSAVTSLDGF RVSDKPAKRA FNSDAEGGDK GGRRSIDFPV KLQRTESFPC KMAMAYHAYN  60
NNNNSSNHHR SFSSHGDDHD RDGDGDGGGP TCTTTTTTRS SASFNSAVPV GGNSGGGAAA  120
SNNPPLQPFD ISPNKTLAAS SHAIFKSPGG TEGIMAAASL GFPFTNAQWN ELERQAMIYK  180
YMMASVPVPP DLLFSITRPP PTVSPSPPLG SGLNLRFSSS GDPEPGRCRR TDGKKWRCSR  240
DVAPDQKYCE RHMHRGRPRS RKPVELAAAN FNNKKTRHCH LLQPSSAVTL AIKENGSSSS  300
STQFLGTLAQ PFHNQTSQFL DKPAEKASNF DSSHRSWDWM MNNQPMPITA PTDHSNQWHN  360
LVSEQTRLGI NGDSLFTGCQ GSSPATRSYH DEPLNRNSFA KLVYRSEDQV INDSSLLINA  420
YTPRGFIDAW SDEPRTACKI SGSSHGKLPL SSLSLTMGGA NDSIDGEMGR IQMSLGVTEL  480
REDHECNVNK PHLSTWLAPV WAQSSSTPGG PLAEVLRSST TASNPQSPIT RNGDASSPRP  540
SSMSSPSGVL QRTLASVSDS SGCSSPNLGS SIVKPEIALP WLNQDKNAST P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_3.145
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909652.10.0growth-regulating factor 7
TrEMBLA0A061G2T91e-130A0A061G2T9_THECC; Growth-regulating factor 7, putative isoform 1
STRINGevm.model.supercontig_3.1450.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121062731
Representative plantOGRP1109257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-35growth-regulating factor 5