PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3.138
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HD-ZIP
Protein Properties Length: 244aa    MW: 28194.2 Da    PI: 5.0625
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3.138genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.2e-183488256
                                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                 +++++f++eq++ Le+ Fe++  +  +++ + A +lgL+ rqV +WFqN+Ra++k
  evm.model.supercontig_3.138 34 KNKRRFSDEQIRLLETIFESETRLEPRKKLQVAGELGLQPRQVAIWFQNKRARWK 88
                                 56789*************************************************9 PP
2HD-ZIP_I/II119.91.3e-3835126293
                  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                  +krr+s+eq++lLE+ Fe+e++Lep++K ++a eLglqprqva+WFqn+RAR+k+kqlE++y+aLk +y++l+++ e+Leke
  evm.model.supercontig_3.138  35 NKRRFSDEQIRLLETIFESETRLEPRKKLQVAGELGLQPRQVAIWFQNKRARWKSKQLEHEYRALKGSYESLASQFESLEKE 116
                                  79******************************************************************************** PP

                  HD-ZIP_I/II  84 veeLreelke 93 
                                  +++L  +l++
  evm.model.supercontig_3.138 117 KQALLVQLRK 126
                                  ****999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-172090IPR009057Homeodomain-like
SuperFamilySSF466895.13E-172492IPR009057Homeodomain-like
PROSITE profilePS5007117.2483090IPR001356Homeobox domain
SMARTSM003893.7E-163294IPR001356Homeobox domain
PfamPF000461.9E-153488IPR001356Homeobox domain
CDDcd000868.36E-133991No hitNo description
PRINTSPR000318.7E-56170IPR000047Helix-turn-helix motif
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
PRINTSPR000318.7E-57086IPR000047Helix-turn-helix motif
PfamPF021838.6E-1490130IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEGSDDDDRH EKENPEAAET NCCSQQRKKK NRMKNKRRFS DEQIRLLETI FESETRLEPR  60
KKLQVAGELG LQPRQVAIWF QNKRARWKSK QLEHEYRALK GSYESLASQF ESLEKEKQAL  120
LVQLRKLSEL RTRSQDVNSG TEDLGGSKMD YTCGEPKIKC DPEGNQSLLQ EKSGDPCGLI  180
MSSSHEYSTE PELRGEEERF RVQKIEEQTD GSLGSNEKWD HGFDSETLFD QSCSSSNWLD  240
FWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12637RKKKNRMKNKRR
22834KKNRMKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_3.138
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909604.11e-179homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A0B2QD541e-57A0A0B2QD54_GLYSO; Homeobox-leucine zipper protein ATHB-7
TrEMBLI1JYL01e-57I1JYL0_SOYBN; Uncharacterized protein
STRINGevm.model.supercontig_3.1381e-179(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-48homeobox 7