PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_29.163
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 284aa    MW: 31858.7 Da    PI: 9.5454
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_29.163genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012187209123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k+F++ + L+ H r +
  evm.model.supercontig_29.163 187 HRCEKCKKVFKSYHALVGHRRIC 209
                                   79******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.3E-6427IPR007087Zinc finger, C2H2
SMARTSM003550.07426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-5187247No hitNo description
PfamPF139121.0E-4187207IPR007087Zinc finger, C2H2
SMARTSM0035517187207IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-6225247IPR007087Zinc finger, C2H2
SMARTSM003550.32225247IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.265225247IPR007087Zinc finger, C2H2
PROSITE patternPS000280227247IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEKHKCKLCA RTFNNGRALG GHMKAHLTTL PLPPKTHHQL AHPSTDSASS SSPQNRHKTT  60
STNLEVEDKS LIYSLRENPK KSFRVADPEF SFAADSAAGS VVQDRESETE SRNPTRRRSK  120
RNRRHDNTSQ KKPIWDETTS SPEPASSVSD TSPEEDVALC LIMLSRDVWK KNKLQFDESD  180
DTIKSKHRCE KCKKVFKSYH ALVGHRRICL SPENFITKNH DQKSFQCPFC FRFFASGQAL  240
GGHKRSHLLV SSSSSSSVLK NSFIDLNMPA PVEDDQFSVV SDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111123RNPTRRRSKRNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_29.163
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901865.10.0zinc finger protein ZAT4
TrEMBLA0A2H5NTT71e-105A0A2H5NTT7_CITUN; Uncharacterized protein
STRINGevm.model.supercontig_29.1630.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17350611
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-40C2H2-like zinc finger protein