PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_29.139
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 798aa    MW: 87165.4 Da    PI: 6.7562
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_29.139genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.41.5e-1044357962374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                    ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+  l+   ++ + + pp++ ++ +++ ++ a+k
  evm.model.supercontig_29.139 435 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLM--NNPVTSPPPRSPTPFDVIFKMGAYK 513
                                   679*************************************************98..4444456777777899********* PP

                          GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163
                                   +fs+vsP+++f ++t+Nqa+lea+e ++r+Hi+Dfdi+ G+QW++++q+L  R++g+p lRiT+++sp++++  el  +++
  evm.model.supercontig_29.139 514 VFSDVSPLIQFVNFTCNQALLEALEDADRIHIVDFDIGFGAQWASFMQELPIRSRGSPLLRITAFASPSTHHPVELALMRD 594
                                   ********************************************************************************* PP

                          GRAS 164 rLakfAeelgvpfefnvlvakrledlele..eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
                                   +L++fA+e+gv+fe +v+  ++le+ +++   +r ++ Ea aVn+ +   +  +++ +l+s    +L++vk+lsPk++v  
  evm.model.supercontig_29.139 595 NLTQFANEIGVSFELEVINIDSLEQTSYSlpIFRSNESEAFAVNFPI--WSSSNQPSALPS----LLRFVKQLSPKILVSL 669
                                   ******************9999998865411568888********99..444445666666....**************** PP

                          GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                                   ++ +d+n+ +F +++++al+ y +lf+sl+a    +s++ +k+Er+ll+++i+n v  + ++     e++  W+  + +aG
  evm.model.supercontig_29.139 670 DRGCDRNDLPFPQHIIHALHSYISLFESLDAL-NVTSDAVNKIERFLLQPRIENTVLGRLRA----PEKMPVWKTLFASAG 745
                                   *****************************876.689*********************99998....9************** PP

                          GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   F+pv++s++a++qa++++++ +++g+++e++++sl l+W++r+L+s+SaWr
  evm.model.supercontig_29.139 746 FTPVTFSNFAETQAECVVKRSQVRGFHIEKRHASLALCWQRRELISASAWR 796
                                   **************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.173408776IPR005202Transcription factor GRAS
PfamPF035145.3E-102435796IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MPFQLQGTKG ALELAGLASI CAQDNWKAKL HHHQQEVNSF SSSNNTEPTS VLHMRRSPSP  60
PTSASTLSSS FNGASAAGNS ADNTIATPTT AAASHIDKKE EWANELQPIP SGLEIVAGTE  120
RCGLGMEDWE TMWPESAASP SQEHSLLRWI AGDIDDGSFG LKQLLQSGST NNGNNNTCLD  180
FDGNAGLGIV DQGPGLEPIN NLIANAGPSL GAFPGSGFNG NGKIGSITTP QPPPAATSGA  240
SSGVGVNANH KVGSATAAAN FNIQSPVFNS PANNLGLPVS LPPCLIYQSQ QQQFVEAPEE  300
KPQILNPQVL MSQHHQQTQN PNFILPFSYG QQEQHLLHPQ LKRHNSGGLD SSSHQIPKLP  360
FSDPGHELLL RKQQQQHVGM GMGLGFSPQG MQFFPQHVHQ QKPLMVAKQK MLGPGEEMTQ  420
NQHHHQLQQQ QHALLDQLYK AAELVGTGNF SHAQGILARL NHQLSPVGKP LQRAAFYFKE  480
ALQLLLLMNN PVTSPPPRSP TPFDVIFKMG AYKVFSDVSP LIQFVNFTCN QALLEALEDA  540
DRIHIVDFDI GFGAQWASFM QELPIRSRGS PLLRITAFAS PSTHHPVELA LMRDNLTQFA  600
NEIGVSFELE VINIDSLEQT SYSLPIFRSN ESEAFAVNFP IWSSSNQPSA LPSLLRFVKQ  660
LSPKILVSLD RGCDRNDLPF PQHIIHALHS YISLFESLDA LNVTSDAVNK IERFLLQPRI  720
ENTVLGRLRA PEKMPVWKTL FASAGFTPVT FSNFAETQAE CVVKRSQVRG FHIEKRHASL  780
ALCWQRRELI SASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3645379622375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_29.139
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901813.10.0scarecrow-like protein 22 isoform X1
TrEMBLA0A061GBD80.0A0A061GBD8_THECC; GRAS family transcription factor
STRINGevm.model.supercontig_29.1390.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16534813
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-123GRAS family protein