PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_286.12
Common NameCUC3
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 361aa    MW: 40065.5 Da    PI: 7.1511
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_286.12genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.99.7e-54221491128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhPtdeel+++yL+ kv + +++   +i+e+d++++ePw+Lp  +k +ekewyfFs rd+ky+tg r+nrat +g
  evm.model.supercontig_286.12  22 LPPGFRFHPTDEELITFYLASKVLNATFSG-LHIAELDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAG 101
                                   79*************************999.56***************8888899************************** PP

                           NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yWkatgkd+ev+s+ +g+l g+kktLvfykgrap+gekt+Wvmheyrl
  evm.model.supercontig_286.12 102 YWKATGKDREVYSAsTGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 149
                                   ************9878889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6317171IPR003441NAC domain
PROSITE profilePS5100559.90922171IPR003441NAC domain
PfamPF023654.7E-2823149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MLAVEDVLRE LGVGEEVNEQ GLPPGFRFHP TDEELITFYL ASKVLNATFS GLHIAELDLN  60
RCEPWELPDV AKMGEKEWYF FSLRDRKYPT GLRTNRATGA GYWKATGKDR EVYSASTGAL  120
LGMKKTLVFY KGRAPRGEKT KWVMHEYRLD GDFSFRHTCK EEWVICRIFH KTGEKKNSVA  180
AAAAASVLSP SRSSLAPVLL ENQTPLLESQ THQTSPGNPF VTNHHLKTLI NPLLSQSNAL  240
INQLSAATNN TNSSILFKSL LSHQQQQLPS TVTKQCKTEA TFSHFQILPV DAKMNWMDKI  300
NHISSSPLFS DMDSSMLGPQ GAAVDDTSTS IAFNTLANFH LMLDQPITLP PAAESWPSIP  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-532217120168NAC domain-containing protein 19
3swm_B6e-532217120168NAC domain-containing protein 19
3swm_C6e-532217120168NAC domain-containing protein 19
3swm_D6e-532217120168NAC domain-containing protein 19
3swp_A6e-532217120168NAC domain-containing protein 19
3swp_B6e-532217120168NAC domain-containing protein 19
3swp_C6e-532217120168NAC domain-containing protein 19
3swp_D6e-532217120168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_286.12
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912315.10.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8511e-110NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLF9W2Z80.0F9W2Z8_CARPA; CUP-SHAPED COTYLEDON 3
STRINGevm.model.supercontig_286.120.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-108NAC family protein
Publications ? help Back to Top
  1. Hasson A, et al.
    Evolution and diverse roles of the CUP-SHAPED COTYLEDON genes in Arabidopsis leaf development.
    Plant Cell, 2011. 23(1): p. 54-68
    [PMID:21258003]
  2. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  3. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  4. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  5. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  6. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]