PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_282.15
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family LBD
Protein Properties Length: 268aa    MW: 28953 Da    PI: 8.405
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_282.15genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.81.3e-314107199
                        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 
                                   +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+
  evm.model.supercontig_282.15   4 SCNGCRVLRKGCSDNCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGS 84 
                                   6******************************************************************************** PP

                        DUF260  77 vgvilklqqqleqlkaelallke 99 
                                   vg+++++++ql+q+++e++l ++
  evm.model.supercontig_282.15  85 VGLLWSGSWQLCQAAVEAVLKGA 107
                                   *****************998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9083109IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PIASEAAANG  120
HGPPLKAYDI RHVSKDENSA ASNDHQRVKT RCRARRVVKP KPSKPELGSA AEPLMNRSTS  180
HESSLSHQSE VAVVDGESKE TESMVSVETA EASLLLRAET GNESGGVEDG VELELRLGLE  240
PVARANHVVP MKKRRIEENT WNMGLGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_282.15
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912377.10.0LOB domain-containing protein 41-like
SwissprotQ9M8861e-109LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2C9WBI91e-151A0A2C9WBI9_MANES; Uncharacterized protein
STRINGevm.model.supercontig_282.150.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-105LOB domain-containing protein 41