PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2783.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family SBP
Protein Properties Length: 282aa    MW: 31357.1 Da    PI: 9.0067
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2783.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.11.1e-42161236277
                                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                   Cqv gC++dls+ k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q
  evm.model.supercontig_2783.1 161 CQVYGCNMDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 236
                                   **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-34155222IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.727158235IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.47E-40159239IPR004333Transcription factor, SBP-box
PfamPF031108.1E-33161234IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDIPVDAFVR SKKSVMGWDL RPSCNFDDNR IVSDREAGES MEIYDVGFPD MTRRPFDSSN  60
AGMLSGEVNS DCSRRVTSAC VINSTLSFGE DESGSKISSS LMKSYSQDSP LIDLKLGRLN  120
ESSNSQNGKV SKERSAASSV RPSFPAKRAR TTSSCSQIPL CQVYGCNMDL SSSKDYHKRH  180
KVCEVHSKTA KVIVNGIEQR FCQQCSRFHL LAEFDDGKRS CRKRLAGHNE RRRKPQFHTL  240
SGKLHKQLQS YHGTEFLGTS VAKGAAFLLP DIFPGGISFQ EX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-32152234284squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2783.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887168.10.0squamosa promoter-binding-like protein 6, partial
TrEMBLA0A2R4K3721e-122A0A2R4K372_LITCN; Squamosa promoter binding-like protein
STRINGevm.model.supercontig_2783.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92752435
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-60SBP family protein