PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_2758.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 381aa MW: 41852.9 Da PI: 4.1594 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.6 | 8e-14 | 2 | 44 | 4 | 46 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 en+ qv fsk r ++KKA+EL++LC +v +i+fs+ ++ evm.model.supercontig_2758.2 2 ENEASLQVIFSKHRSSLFKKASELCTLCRPDVGLIVFSPGNRA 44 788889********************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-10 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.624 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.3E-17 | 2 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-16 | 2 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-6 | 13 | 28 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-6 | 28 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MENEASLQVI FSKHRSSLFK KASELCTLCR PDVGLIVFSP GNRAFCYGNP NIDIVIDRFL 60 SIDVHPTRDP DNDNDTQQTI SRITEAQDKE EAARKRGKEL KQRRKGLMKE LWYTRSMDKF 120 NLEELEVLDV GMKALWNDVA ELAKKLKKEQ GNSSSAEGSP RDDGMFYSDP AMKTLTTLPM 180 PSMPSNPTHE YAPSSTNSTP PLSSFCNLDS GNPNIMMMDN PLNDSSMALD PVDDLMAMPR 240 DLFNNLVMIE SDDPIAALNA GDNPDIMSDA FGNQIATMDI NLSNDPNIGP NEFFNPSTMP 300 HAPNDPISTT SNPLNMIRIV PDDSNLNSVF DGFTLEMLFA DPLDDENFIV DNPNEAANGD 360 NPKTMPPPLA GNVLGSGQGI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_2758.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238590 | 0.0 | AC238590.1 Carica papaya BAC clone 12I03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021887443.1 | 0.0 | agamous-like MADS-box protein AGL62 | ||||
STRING | evm.model.supercontig_2758.2 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-25 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_2758.2 |