PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_27.81
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 386aa    MW: 43086.7 Da    PI: 7.9302
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_27.81genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.41.3e-53151421128
                          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                  lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgy
  evm.model.supercontig_27.81  15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGY 95 
                                  79****************************.89***************8888999*************************** PP

                          NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  Wkatg+dk++l+  ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  evm.model.supercontig_27.81  96 WKATGTDKPILTCkGNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
                                  **********98657888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-6410177IPR003441NAC domain
PROSITE profilePS5100561.49315177IPR003441NAC domain
PfamPF023653.7E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MESTDSSSGS QHPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVTIIAEV DLYKFDPWEL  60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTCKG NQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLVDGNPVGS KSHPSDSPNK KSSLRLDDWV LCRIYKKNNS  180
SQGTLMEREM KEESMEGMVE TVPIITTYSH QNLKTKNTSC YGSLMVENDE NFFHGILSSS  240
SSGDHHYHHH HHHHQQLASS TSKPADNSIS IPSVSNTNTT TIKRPLQPPP HQNYWNHHQY  300
QAGSIGSSSS SKRFHGDLNI NGGGSTGNDH DHDHDHDHDD NNSSFISLLN QLPQSSMVHP  360
NSIIGSLGDG VLRQQFQLPS MNWNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-761518217170NO APICAL MERISTEM PROTEIN
1ut4_B9e-761518217170NO APICAL MERISTEM PROTEIN
1ut7_A9e-761518217170NO APICAL MERISTEM PROTEIN
1ut7_B9e-761518217170NO APICAL MERISTEM PROTEIN
3swm_A8e-761518220173NAC domain-containing protein 19
3swm_B8e-761518220173NAC domain-containing protein 19
3swm_C8e-761518220173NAC domain-containing protein 19
3swm_D8e-761518220173NAC domain-containing protein 19
3swp_A8e-761518220173NAC domain-containing protein 19
3swp_B8e-761518220173NAC domain-containing protein 19
3swp_C8e-761518220173NAC domain-containing protein 19
3swp_D8e-761518220173NAC domain-containing protein 19
4dul_A9e-761518217170NAC domain-containing protein 19
4dul_B9e-761518217170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_27.81
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902077.10.0NAC transcription factor 25
SwissprotQ8GY421e-117NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0M3R8651e-163A0A0M3R865_MANES; NAC transcription factors 83
STRINGevm.model.supercontig_27.810.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-108NAC domain containing protein 25