PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_27.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | HB-other | ||||||||
Protein Properties | Length: 222aa MW: 23877.7 Da PI: 5.4522 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.9 | 1.1e-20 | 39 | 94 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t++qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR k+kk evm.model.supercontig_27.2 39 PKRQMKTPYQLETLEKVYAVETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKDKK 94 69****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-20 | 15 | 95 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.6E-18 | 25 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.52 | 35 | 95 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-19 | 37 | 99 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.3E-18 | 39 | 94 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.89E-18 | 40 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEAGSDGETP VRNNSSNNNN NNGSNNKSLG NSSEGLAKPK RQMKTPYQLE TLEKVYAVET 60 YPSEATRAEL SEKLGLSDRQ LQMWFCHRRL KDKKEVPAKK PRKGIALPPP GSPEDELRVG 120 HEPDYGSGSG SGSGSSPFME SRKLGPGSSN SRGAMVDEGP IGRRYYESPQ TIMELRAIAC 180 VEAQLGEPLR EDGPILGMEF DPLPPGAFGA PIEVSCPVFI G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 94 | RRLKDKKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_27.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021902107.1 | 1e-144 | homeobox-DDT domain protein RLT1 | ||||
Swissprot | F4HY56 | 4e-64 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A0B0MXB4 | 5e-82 | A0A0B0MXB4_GOSAR; Homeobox ceh-5 | ||||
TrEMBL | A0A1R3I1C2 | 1e-80 | A0A1R3I1C2_COCAP; Uncharacterized protein | ||||
STRING | evm.model.supercontig_27.2 | 1e-160 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25681 | 3 | 3 | Representative plant | OGRP1577 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 3e-60 | homeobox-1 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_27.2 |