PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_27.16
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 250aa    MW: 26684.9 Da    PI: 9.1858
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_27.16genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-203181256
                          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                 +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  evm.model.supercontig_27.16 31 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 81
                                 69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.90E-183188No hitNo description
SuperFamilySSF541712.22E-223189IPR016177DNA-binding domain
PfamPF008475.1E-143180IPR001471AP2/ERF domain
SMARTSM003803.0E-393194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-323188IPR001471AP2/ERF domain
PROSITE profilePS5103223.8943188IPR001471AP2/ERF domain
PRINTSPR003675.2E-113243IPR001471AP2/ERF domain
PRINTSPR003675.2E-115470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAPRANTAAM KPISNGNVAP AAAGADCKEV HFRGVRKRPW GRYAAEIRDP GKKSRVWLGT  60
FDTAEEAARA YDAAAREFRG AKAKTNFPLP PENLTMASTK RAKNENGSIN NNNQSPSQSS  120
TVESSSCCEP EPALTMDSSP LDLNLGRGFG SADKFPFQPP ATPAVGFFPG GVVSANQMMY  180
LNAIMRAGEA MKGQQYQRIR FNNHHHGGGV QSDSDSSSVV DVKPAPPPPT TRGPLFDFDL  240
NQLPPPEIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212789164ATERF1
3gcc_A2e-212789164ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_27.16
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902387.10.0ethylene-responsive transcription factor 4
TrEMBLA0A0H3YCD02e-62A0A0H3YCD0_9ROSA; Transcription factor ERF11
STRINGevm.model.supercontig_27.160.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-27erf domain protein 9