PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_26.97
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 336aa    MW: 38412.3 Da    PI: 9.1248
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_26.97genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181964147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                 rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  evm.model.supercontig_26.97 19 RGHWRPVEDERLRELVQQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 64
                                 899*****************************.***********996 PP
2Myb_DNA-binding58.91.2e-1871114146
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                  r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  evm.model.supercontig_26.97  71 RRPFSEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 114
                                  679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4651465IPR017930Myb domain
SuperFamilySSF466895.62E-2918112IPR009057Homeodomain-like
SMARTSM007173.6E-141867IPR001005SANT/Myb domain
PfamPF002494.8E-171964IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-262072IPR009057Homeodomain-like
CDDcd001676.31E-132263No hitNo description
PROSITE profilePS5129427.57766120IPR017930Myb domain
SMARTSM007174.9E-1670118IPR001005SANT/Myb domain
PfamPF002491.5E-1571113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2173119IPR009057Homeodomain-like
CDDcd001671.76E-782113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEDSEAASTD DITKGSCPRG HWRPVEDERL RELVQQYGAQ NWNSIAEKLQ GRSGKSCRLR  60
WFNQLDPRIN RRPFSEEEEE RLLAAHRIHG NKWALIARLF PGRTDNAVKN HWHVIMARKH  120
KQQAKQFGNN KTSYNNQEGD SNPNPNLIHP RKSRPQGWFG SRLIGTDNAS FLEFQDLNKH  180
THNHHLFSPS PSTYSPSSTF ASSSNNSSSV SVKREGRDCF LNSTSSFYTI ETSKISNQLP  240
IYRFHNPNSL IYDSCYQNST SCDQLPSYRT NIQTSFGYFK LDDHHRDQVN GIFKREMASF  300
HENLVSPRSS ERGDESIKSK DNAPFIDFLG VGISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31191197107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_26.97
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270823e-71HQ527082.1 Gossypium herbaceum clone NBRI_B_1735 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902733.10.0transcription factor MYB117-like
TrEMBLA0A0E4FJ101e-106A0A0E4FJ10_POPPZ; MYB transcriptional factor
STRINGevm.model.supercontig_26.970.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16592913
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-60myb domain protein 105