PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_26.96
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 392aa    MW: 43113.2 Da    PI: 4.3151
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_26.96genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS190.61e-582193913176
                         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                  elL++cA a+s+g+  +a+a++++l++++s +gdp qR+aay++e+Laar+a s++ lykal+++e +   ss++laa++++
  evm.model.supercontig_26.96 219 ELLIDCASALSDGNRDEASAIINELQQIVSIQGDPPQRIAAYMMEGLAARMAASGKFLYKALKCKEPP---SSDRLAAMQIL 297
                                  79*****************************************************************9...9********** PP

                         GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                  +ev+P++kf++++aN aI ea++ge+rvHiiDfdi+qG Q+++L+q+La+ p++ p+lR+Tgv++pes+      l+ +g r
  evm.model.supercontig_26.96 298 FEVCPCFKFGFMAANGAIIEALKGEKRVHIIDFDINQGSQYITLIQTLATLPGKLPRLRLTGVDDPESVqrPVGGLKIIGLR 379
                                  *******************************************************************99888899******* PP

                         GRAS 165 LakfAeelgvpf 176
                                  L+k+Ae+lgv+f
  evm.model.supercontig_26.96 380 LEKLAEALGVSF 391
                                  **********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.971191391IPR005202Transcription factor GRAS
PfamPF035143.4E-56219391IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSLVRSAEPS ATSYRNPKLY SLKGSTDNTG SSNQIFNAER QMSTCMSNSY SSESYEKYFL  60
ESPTEELIHP STSAISGNSC PQQDASTYQQ RASLCSSMAI QNSFDTSFTS RRPYDGYQEN  120
LGPDYLENQN LDPVDYDEDT MRLKLQELER ALLDDIDVDE DDEMFGSGQS MEIESEWSDP  180
IQNTLLHDSP KESSSADSNL SSISSTKEVT QISCRTPKEL LIDCASALSD GNRDEASAII  240
NELQQIVSIQ GDPPQRIAAY MMEGLAARMA ASGKFLYKAL KCKEPPSSDR LAAMQILFEV  300
CPCFKFGFMA ANGAIIEALK GEKRVHIIDF DINQGSQYIT LIQTLATLPG KLPRLRLTGV  360
DDPESVQRPV GGLKIIGLRL EKLAEALGVS F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2422439126190Protein SCARECROW
5b3h_A3e-2422439125189Protein SCARECROW
5b3h_D3e-2422439125189Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_26.96
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902531.10.0LOW QUALITY PROTEIN: scarecrow-like protein 1
SwissprotQ9SDQ31e-151SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2H5PI280.0A0A2H5PI28_CITUN; Uncharacterized protein
TrEMBLA0A2H5PI420.0A0A2H5PI42_CITUN; Uncharacterized protein (Fragment)
STRINGevm.model.supercontig_26.960.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Representative plantOGRP82621116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.11e-129SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]